Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG251_RS17980 Genome accession   NZ_CP108508
Coordinates   4083604..4084203 (-) Length   199 a.a.
NCBI ID   WP_326678144.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01237     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4078604..4089203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG251_RS17955 (OG251_17975) - 4079376..4080362 (-) 987 WP_326678140.1 hypothetical protein -
  OG251_RS17960 (OG251_17980) - 4080865..4081326 (+) 462 WP_326678141.1 PaaI family thioesterase -
  OG251_RS17965 (OG251_17985) - 4081479..4082597 (+) 1119 WP_326678142.1 abortive phage infection protein -
  OG251_RS17970 (OG251_17990) - 4082643..4082831 (-) 189 Protein_3547 LamG domain-containing protein -
  OG251_RS17975 (OG251_17995) - 4082879..4083538 (-) 660 WP_326678143.1 DUF5063 domain-containing protein -
  OG251_RS17980 (OG251_18000) recR 4083604..4084203 (-) 600 WP_326678144.1 recombination mediator RecR Machinery gene
  OG251_RS17985 (OG251_18005) - 4084303..4084638 (-) 336 WP_073719500.1 YbaB/EbfC family nucleoid-associated protein -
  OG251_RS17990 (OG251_18010) - 4085011..4085799 (+) 789 WP_326678145.1 SLATT domain-containing protein -
  OG251_RS17995 (OG251_18015) - 4086286..4086936 (-) 651 WP_266805106.1 hypothetical protein -
  OG251_RS18000 (OG251_18020) - 4087075..4087797 (-) 723 WP_326678146.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21885.18 Da        Isoelectric Point: 5.1558

>NTDB_id=661817 OG251_RS17980 WP_326678144.1 4083604..4084203(-) (recR) [Streptomyces sp. NBC_01237]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQTEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEQCGICRDPRRDQTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=661817 OG251_RS17980 WP_326678144.1 4083604..4084203(-) (recR) [Streptomyces sp. NBC_01237]
TTGTACGAAGGCGTTGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCCCAGCGGAT
CGCCTTCCACATTCTTCAGACCGAGCCCACCGACGTACGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCCGTGTGCGGCAACGTCGCCCAGCAGGAACAGTGCGGGATCTGCCGGGACCCGCGCCGCGATCAGACGGTC
ATCTGTGTGGTCGAGGAACCCAAGGATGTCGTCGCGATCGAGCGGACCCGTGAATTCCGGGGCCGCTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGGGAACTGCTGGCCCGGCTCGCGGACGGTT
CCATCACGGAACTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTCAGAGTGACCCGGCTGGCCAGTGGCCTGCCCGTGGGCGGCGACCTGGAGTACGCCGACGAGGTCACCCT
GGGCCGCGCCTTCGAAGGAAGGCGGCTGCTGGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.155

97.487

0.538
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462