Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG251_RS11845 Genome accession   NZ_CP108508
Coordinates   2664164..2665252 (-) Length   362 a.a.
NCBI ID   WP_326681230.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01237     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2659164..2670252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG251_RS11835 (OG251_11865) rcrP 2660381..2662114 (+) 1734 WP_326677126.1 ABC transporter ATP-binding protein Regulator
  OG251_RS11840 (OG251_11870) - 2662114..2664039 (+) 1926 WP_326677127.1 ABC transporter ATP-binding protein -
  OG251_RS11845 (OG251_11875) rpoS 2664164..2665252 (-) 1089 WP_326681230.1 RNA polymerase sigma factor Regulator
  OG251_RS11850 (OG251_11880) dnaG 2665608..2667527 (-) 1920 WP_326677128.1 DNA primase -
  OG251_RS11855 (OG251_11885) - 2667707..2668966 (-) 1260 WP_326677129.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 40718.30 Da        Isoelectric Point: 5.5534

>NTDB_id=661804 OG251_RS11845 WP_326681230.1 2664164..2665252(-) (rpoS) [Streptomyces sp. NBC_01237]
MQTRTVTTTTEHVPAIPAQNRAVHHPETAVDPPSEPDAVMEESSEVPDLPEPRSRPDAGGPSSDLFRQYLREIGRIPLLT
AADEVDLARRVEAGLFAEERLASTPDPDSRLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNL
GLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAAQLDLT
PERVVEVRRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLADGRP
RTLEEIGRIFGVTRERIRQIESKTLSKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=661804 OG251_RS11845 WP_326681230.1 2664164..2665252(-) (rpoS) [Streptomyces sp. NBC_01237]
GTGCAGACCCGGACCGTGACGACGACGACCGAGCATGTGCCGGCCATTCCGGCGCAGAACCGGGCCGTGCACCACCCGGA
GACCGCGGTGGACCCGCCGTCGGAACCCGACGCGGTCATGGAGGAGTCGTCGGAGGTGCCCGACCTCCCGGAGCCGCGGA
GCAGACCGGACGCCGGTGGTCCGTCCTCCGACCTCTTCCGGCAGTATCTGCGGGAGATCGGCCGGATACCGCTGCTCACC
GCGGCCGACGAGGTGGACCTCGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAACGGCTCGCGAGCACCCCCGACCC
CGACTCCCGGCTCGCCGTCGACCTGGACCGTCTCGTCGTCATGGGGCGGATGGCGAAGCGCCGACTGATCGAGGCCAACC
TGCGCCTCGTCGTCTCCGTCGCCAAGCGGTACGTGGGCCGCGGCCTGACGATGCTCGACCTCGTCCAGGAGGGGAACCTC
GGACTGATCAGGGCGGTCGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCGACCTGGTGGATACGCCA
GGCCATGTCCCGCGCGCTCGCGGACCAGGCGCGGACCATCCGGGTCCCGGTCCATGTCGTCGAGCTGATCAACCGCGTCG
TACGGGTCCAGCGCCGCATGCTCCAGGAACGCGGCTACGAGCCGACCGCCGAAGAGGTGGCCGCCCAGCTCGACCTGACC
CCGGAACGGGTCGTCGAGGTCCGGCGCCTGGCCCAGGAACCCGTCTCGCTCCACGCACCCGTCGGCGAGGAGGACGACGT
GTCCTTCGGTGACCTCATCGAGGACGGCGACGCGGCCTCACCGGTCGAGTCCGCCGCGTTCCTGCTGCTGCGCGAACACC
TGGAGGCGGTGCTCTCCACGCTGGGCGAGCGCGAACGCAAGGTGGTCCAGCTGCGCTACGGGCTGGCCGACGGGCGGCCC
CGCACCCTTGAGGAGATCGGCCGCATCTTCGGCGTGACCCGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCAGCAA
GCTGCGGGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(64-97)

Sigma-70 region 3 (Sigma70_r3)

(208-284)

Sigma-70, region 4 (Sigma70_r4)

(297-349)

Sigma-70 region 2 (Sigma70_r2)

(129-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.058

95.856

0.384