Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG251_RS11835 Genome accession   NZ_CP108508
Coordinates   2660381..2662114 (+) Length   577 a.a.
NCBI ID   WP_326677126.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01237     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2655381..2667114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG251_RS11800 (OG251_11830) - 2656110..2656895 (-) 786 WP_326677123.1 DUF6202 family protein -
  OG251_RS11805 (OG251_11835) - 2657032..2657319 (-) 288 WP_326677124.1 hypothetical protein -
  OG251_RS11825 (OG251_11855) - 2658284..2658589 (+) 306 WP_326681229.1 YtxH domain-containing protein -
  OG251_RS11830 (OG251_11860) - 2658663..2660180 (+) 1518 WP_326677125.1 FGGY family carbohydrate kinase -
  OG251_RS11835 (OG251_11865) rcrP 2660381..2662114 (+) 1734 WP_326677126.1 ABC transporter ATP-binding protein Regulator
  OG251_RS11840 (OG251_11870) - 2662114..2664039 (+) 1926 WP_326677127.1 ABC transporter ATP-binding protein -
  OG251_RS11845 (OG251_11875) rpoS 2664164..2665252 (-) 1089 WP_326681230.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62809.89 Da        Isoelectric Point: 5.1509

>NTDB_id=661803 OG251_RS11835 WP_326677126.1 2660381..2662114(+) (rcrP) [Streptomyces sp. NBC_01237]
MLIKLLRAYLGPYRKPIALLVFLQLLQTCATLYLPSLNADIIDNGVVKGDTGYILEFGGVMIAVSVLQVLCNIGAVYYGA
RTASALGRDVRASVFDRVQAFSARELGRFGAPSLITRTTNDVQQIQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPILGIAVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANNDLTDVSLSTGRLMAF
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLETDSSVVP
PLAPVTELTRHGHLEVRGAEFRYPGAEEPVLRTVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEVAQAKEFVERLEHGLNAPIAQGGTNVSGGQRQRL
AIARTLVQQPEIYLFDDSFSALDYATDAALRAALSRETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHRELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=661803 OG251_RS11835 WP_326677126.1 2660381..2662114(+) (rcrP) [Streptomyces sp. NBC_01237]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGCCCGTACAGAAAACCCATCGCGCTGCTGGTGTTCCTCCAGCTGTTGCA
GACCTGCGCCACCCTCTATCTGCCCAGCCTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTGGAGTTCGGCGGCGTCATGATCGCCGTCAGCGTCCTGCAGGTGCTCTGCAACATCGGCGCCGTCTACTACGGCGCG
CGCACCGCGTCCGCTCTCGGGCGCGACGTCCGGGCCTCGGTCTTCGACCGGGTGCAGGCTTTCTCGGCACGTGAGTTGGG
GCGCTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGGTGCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCCGCGGTC
CTGCTGGCGGTGGTGCCGATCCTCGGTATCGCGGTGAGCCTCATCGTGAAGAAGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
GGTACGAGGAGGAGCGGTTCCGGGGGGCGAACAACGACCTGACCGATGTGTCGCTTTCGACCGGCCGGCTCATGGCGTTC
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCCATCGCGGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAACGCGTCCAGGAGGTCCTGGAGACCGATTCGAGCGTCGTGCCG
CCGCTCGCCCCGGTCACGGAGCTGACCAGGCACGGGCATCTGGAGGTGCGGGGCGCGGAGTTCCGGTACCCGGGTGCCGA
GGAGCCGGTGCTGCGGACCGTGGATCTGGTGGCGCGCCCCGGTGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGCCTCGTACCGCGGCTGTTCGACGTGACGGACGGCGAGGTGCTGGTCGACGGTACGGACGTACGG
ACGCTGGACCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTGCCGCAGAAGCCGTATCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGGTACGGGAATCCGGACGCGAGCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCCCAGGCCAAGGAGTTCG
TGGAGCGGCTGGAGCACGGGCTGAACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGTGGGCAGCGGCAGCGTCTG
GCGATCGCCAGGACGCTCGTGCAGCAGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACGGA
CGCGGCACTGCGCGCGGCGCTGTCCCGGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCCGACCGGATTCTGGTGCTGGACGAGGGGCGGGTCGTCGGGAGCGGCACCCATCGCGAACTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.559

99.133

0.402