Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG348_RS21200 Genome accession   NZ_CP108491
Coordinates   4708483..4709082 (+) Length   199 a.a.
NCBI ID   WP_124719582.1    Uniprot ID   A0ABQ2VW36
Organism   Streptomyces sp. NBC_01243     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4703483..4714082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG348_RS21175 (OG348_21160) - 4703793..4705166 (+) 1374 WP_266492336.1 aspartate aminotransferase family protein -
  OG348_RS21180 (OG348_21165) - 4705285..4706031 (+) 747 WP_124719584.1 GntR family transcriptional regulator -
  OG348_RS21185 (OG348_21170) - 4706134..4706784 (+) 651 WP_327310890.1 hypothetical protein -
  OG348_RS21190 (OG348_21175) - 4706920..4707738 (-) 819 WP_241196477.1 SLATT domain-containing protein -
  OG348_RS21195 (OG348_21180) - 4708094..4708429 (+) 336 WP_072487886.1 YbaB/EbfC family nucleoid-associated protein -
  OG348_RS21200 (OG348_21185) recR 4708483..4709082 (+) 600 WP_124719582.1 recombination mediator RecR Machinery gene
  OG348_RS21205 (OG348_21190) - 4709214..4709873 (+) 660 WP_124719581.1 DUF5063 domain-containing protein -
  OG348_RS21210 (OG348_21195) - 4709940..4710224 (-) 285 WP_327310891.1 hypothetical protein -
  OG348_RS21215 (OG348_21200) - 4710498..4711769 (+) 1272 WP_266492349.1 aspartate kinase -
  OG348_RS21220 (OG348_21205) - 4711766..4712830 (+) 1065 WP_266620295.1 aspartate-semialdehyde dehydrogenase -
  OG348_RS21225 (OG348_21210) - 4713199..4713774 (+) 576 WP_124719577.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21887.16 Da        Isoelectric Point: 5.1558

>NTDB_id=661591 OG348_RS21200 WP_124719582.1 4708483..4709082(+) (recR) [Streptomyces sp. NBC_01243]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQQEQCNICRDTRRDPSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=661591 OG348_RS21200 WP_124719582.1 4708483..4709082(+) (recR) [Streptomyces sp. NBC_01243]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCCGAGCCGACCGATGTGCGGCGCCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGTTCGGTCTGCGGCAACGTCGCCCAGCAGGAGCAGTGCAACATCTGCCGGGACACGCGCCGCGACCCGTCGGTG
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGCGAGCTGCTCGCCCGCCTCGCCGACGGTT
CGATCACGGAACTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGCCTGCGGGTCACCAGACTGGCCAGCGGCCTGCCGGTCGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452