Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG247_RS23685 Genome accession   NZ_CP108488
Coordinates   5245639..5246238 (+) Length   199 a.a.
NCBI ID   WP_243330636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01244     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5240639..5251238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG247_RS23665 (OG247_23685) - 5240752..5243301 (+) 2550 WP_327254139.1 glycosyltransferase family 2 protein -
  OG247_RS23670 (OG247_23690) - 5243484..5244134 (+) 651 WP_250744899.1 hypothetical protein -
  OG247_RS23675 (OG247_23695) - 5244192..5244917 (-) 726 WP_327254140.1 SLATT domain-containing protein -
  OG247_RS23680 (OG247_23700) - 5245186..5245530 (+) 345 WP_327254141.1 YbaB/EbfC family nucleoid-associated protein -
  OG247_RS23685 (OG247_23705) recR 5245639..5246238 (+) 600 WP_243330636.1 recombination mediator RecR Machinery gene
  OG247_RS23690 (OG247_23710) - 5246231..5246878 (+) 648 WP_327254142.1 DUF5063 domain-containing protein -
  OG247_RS23695 (OG247_23715) - 5247000..5248277 (+) 1278 WP_266906273.1 aspartate kinase -
  OG247_RS23700 (OG247_23720) - 5248274..5249368 (+) 1095 WP_327254143.1 aspartate-semialdehyde dehydrogenase -
  OG247_RS23705 (OG247_23725) - 5249675..5250346 (+) 672 WP_327257589.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21906.26 Da        Isoelectric Point: 5.1721

>NTDB_id=661507 OG247_RS23685 WP_243330636.1 5245639..5246238(+) (recR) [Streptomyces sp. NBC_01244]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDLTV
ICVVEESKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSVTELIIATDPNLEGEATATYLARMMK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=661507 OG247_RS23685 WP_243330636.1 5245639..5246238(+) (recR) [Streptomyces sp. NBC_01244]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGATGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGTGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGATCCGCGCCGCGATCTGACGGTC
ATCTGTGTGGTCGAGGAGTCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGGGAGCTGCTGGCGCGGCTCGCGGACGGTT
CGGTCACCGAGCTGATCATCGCGACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATGAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472