Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG247_RS14490 Genome accession   NZ_CP108488
Coordinates   3256652..3257767 (-) Length   371 a.a.
NCBI ID   WP_327252642.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01244     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3251652..3262767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG247_RS14475 (OG247_14515) - 3252330..3252695 (-) 366 WP_327252639.1 hypothetical protein -
  OG247_RS14480 (OG247_14520) rcrP 3252911..3254644 (+) 1734 WP_327252640.1 ABC transporter ATP-binding protein Regulator
  OG247_RS14485 (OG247_14525) rcrQ 3254641..3256566 (+) 1926 WP_327252641.1 ABC transporter ATP-binding protein Regulator
  OG247_RS14490 (OG247_14530) rpoS 3256652..3257767 (-) 1116 WP_327252642.1 RNA polymerase sigma factor Regulator
  OG247_RS14495 (OG247_14535) - 3257995..3258492 (-) 498 WP_327252643.1 hypothetical protein -
  OG247_RS14500 (OG247_14540) - 3258692..3260821 (-) 2130 WP_327252644.1 molybdopterin oxidoreductase family protein -
  OG247_RS14505 (OG247_14545) - 3260868..3261227 (-) 360 WP_327252645.1 hypothetical protein -
  OG247_RS14510 (OG247_14550) - 3261330..3262100 (-) 771 WP_327252646.1 glucose 1-dehydrogenase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 41420.19 Da        Isoelectric Point: 4.7512

>NTDB_id=661487 OG247_RS14490 WP_327252642.1 3256652..3257767(-) (rpoS) [Streptomyces sp. NBC_01244]
MQTQSLTVTVSPPAGVPAAEEPEPEAEADAMHEEEAEEAEGAEELEGPELLEKVPTPRKRPAEGSGGAGPSADLFRQYLR
EIGRIPLLTAEEEVELARRVEAGLFAEEKLGSGAPLDLQLTLDLDKLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTM
LDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAE
EVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQL
RYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=661487 OG247_RS14490 WP_327252642.1 3256652..3257767(-) (rpoS) [Streptomyces sp. NBC_01244]
GTGCAGACCCAGAGCTTGACCGTCACCGTCAGCCCGCCCGCCGGAGTGCCCGCGGCCGAAGAGCCCGAGCCCGAGGCCGA
GGCCGACGCCATGCACGAGGAGGAGGCCGAGGAGGCCGAAGGGGCTGAGGAGTTGGAGGGCCCGGAGCTGCTGGAGAAGG
TGCCCACGCCGCGCAAGCGCCCGGCGGAAGGCTCCGGCGGAGCGGGACCGTCCGCCGACCTCTTCCGGCAGTACCTGCGC
GAGATAGGCAGGATCCCGCTGCTCACCGCCGAGGAGGAGGTCGAGCTCGCGCGGCGCGTGGAAGCGGGCCTGTTCGCGGA
GGAGAAGCTCGGCAGCGGAGCCCCGCTGGACCTGCAGCTCACCCTCGACCTCGACAAGCTCGTGGTCATGGGCCGGATGG
CCAAACGCCGCCTCATCGAGTCGAACCTGCGGCTCGTCGTCTCCGTGGCCAAGCGCTACGTCGGCCGCGGACTGACCATG
CTCGATCTGGTCCAGGAGGGGAACCTCGGACTGATCCGCGCCGTCGAGAAGTTCGACTACGCCCGCGGCTACAAGTTCTC
CACCTACGCCACCTGGTGGATCCGCCAGGCCATGTCCCGGGCGCTGGCCGACCAGGCCCGCACCATCCGGGTCCCCGTCC
ACGTCGTGGAGCTGATCAACCGCGTCGTGCGCGTCCAGCGCCGCATGCTCCAGGAGCGGGGTTACGAGCCCACCGCCGAA
GAGGTCGCCGTCCACCTGGAGTTGACCCCCGAGCGGGTCCTGGAGGTGCTGCGCCTCGCGCAGGAACCGGTCTCGCTGCA
CGCACCCGTGGGCGAGGAGGACGATGTCGCGCTCGGCGACCTCATCGAGGACGGGGACGCCGCCTCCCCGGTCGAATCGG
CCGCGTTCTTCCTGCTCCGCGAGCACCTCGAAGCGGTGCTCTCGACCCTCGGGGAGCGGGAGCGCAAGGTCGTCCAGCTC
CGCTACGGGCTCGCCGACGGGCGGCCGCGCACCCTGGAGGAGATCGGGCGGATCTTCGGTGTGACCCGTGAGCGGATCCG
GCAGATCGAGTCCAAGACCCTCAACAAACTGCGCGACCACGCCTTCGCGGACCAGCTGCGCGGATATCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(217-293)

Sigma-70 region 2 (Sigma70_r2)

(138-207)

Sigma-70, region 4 (Sigma70_r4)

(306-358)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(73-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.429

94.34

0.391