Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG247_RS14480 Genome accession   NZ_CP108488
Coordinates   3252911..3254644 (+) Length   577 a.a.
NCBI ID   WP_327252640.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01244     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3247911..3259644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG247_RS14445 (OG247_14485) - 3248079..3249200 (-) 1122 WP_327252636.1 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  OG247_RS14465 (OG247_14505) - 3250381..3250689 (+) 309 WP_327252637.1 YtxH domain-containing protein -
  OG247_RS14470 (OG247_14510) - 3250851..3252290 (+) 1440 WP_327252638.1 FGGY family carbohydrate kinase -
  OG247_RS14475 (OG247_14515) - 3252330..3252695 (-) 366 WP_327252639.1 hypothetical protein -
  OG247_RS14480 (OG247_14520) rcrP 3252911..3254644 (+) 1734 WP_327252640.1 ABC transporter ATP-binding protein Regulator
  OG247_RS14485 (OG247_14525) rcrQ 3254641..3256566 (+) 1926 WP_327252641.1 ABC transporter ATP-binding protein Regulator
  OG247_RS14490 (OG247_14530) rpoS 3256652..3257767 (-) 1116 WP_327252642.1 RNA polymerase sigma factor Regulator
  OG247_RS14495 (OG247_14535) - 3257995..3258492 (-) 498 WP_327252643.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62577.63 Da        Isoelectric Point: 5.3983

>NTDB_id=661485 OG247_RS14480 WP_327252640.1 3252911..3254644(+) (rcrP) [Streptomyces sp. NBC_01244]
MLIRLLRTHLGPYRKPIAVLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAFGRDVRAGVFDRVQSFSARELGHFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIFMALSLDVKLSGV
LLAVVPILGLSVGAIVLKTRPLFRAMQTRLDTVNRVLREQITGNRVIRAFIRDDYEKERFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVVWFGAMRIDSGDMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTDSSVVP
PADPVRKLLRHGLLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLIPRLFDATGGDVLVDGEDVR
RLDPDLLARTVGMVPQKPYLFSGTIASNLRYGRPDATDEELWHALEVAQAKGFVSELEGGLDAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALARETEEATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=661485 OG247_RS14480 WP_327252640.1 3252911..3254644(+) (rcrP) [Streptomyces sp. NBC_01244]
GTGCTCATACGACTTCTGCGGACCCATCTGGGGCCGTACCGGAAACCGATCGCCGTGCTGGTCCTGCTGCAGCTGCTGCA
GACCAGCGCGAGCCTCTACCTGCCCACGCTGAACGCCGACATCATTGACAACGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGCGCTTCGGCGCGCTGATGCTCGGCGTCTCACTGGTCCAGCTCGTCTGCAACGTCGGGGCCGTCTACTACGGCGCC
CGCACCGCCGCGGCGTTCGGCCGCGACGTCCGGGCCGGCGTCTTCGACCGCGTGCAGAGCTTCTCCGCGCGCGAGCTCGG
CCACTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTCGTGCTGATGACCTTCA
CGCTGATGGTCTCCGCGCCGATCATGTGCGTCGGCGGCATCTTCATGGCGCTCTCGCTGGACGTGAAGCTCTCGGGGGTG
CTGCTCGCGGTGGTCCCGATCCTCGGCCTGTCGGTCGGCGCGATCGTGCTGAAGACCCGCCCGCTGTTCCGAGCGATGCA
GACGCGTCTGGACACGGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCATCCGCGACG
ACTACGAGAAGGAGCGCTTCCGCGAAGCCAACGCCGACCTCACCGGCGTCTCGCTGGCCGCCGGCAAGCTGCTCGCGCTG
ATGTTCCCGACCGTGATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCGTCTGGTTCGGCGCGATGCGCATCGACTCGGG
CGACATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCGACTCCAGCGTGGTCCCT
CCCGCCGACCCGGTCCGCAAGCTCCTTCGTCACGGCCTCCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCGCCCGTGTTGCGCGGGGTCGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTGGGGCTGATCCCCCGGCTCTTCGACGCGACCGGCGGCGACGTGCTCGTCGACGGCGAGGACGTGCGC
CGCCTCGACCCCGACCTGCTCGCCAGGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTCTTCTCCGGGACCATCGCCAG
CAACCTGCGCTACGGGCGCCCCGACGCCACCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGGCTTCG
TGTCCGAACTGGAGGGCGGGCTCGACGCTCCGGTCTCCCAGGGCGGCACCAACGTCTCCGGCGGCCAGCGCCAGCGGCTC
GCGATCGCGCGCACGCTCGTACAGCGCCCGGAGATCTACCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCCACTGA
CGCGGCGCTGCGCTCCGCGCTCGCCCGCGAGACCGAGGAGGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCGGACCGGATCATCGTCCTCGACGAGGGGCAGGTGGTGGGCGAGGGACGCCACCACGAGCTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.435

93.934

0.399