Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG408_RS18365 Genome accession   NZ_CP108472
Coordinates   4287870..4288469 (-) Length   199 a.a.
NCBI ID   WP_266780167.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01257     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4282870..4293469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG408_RS18345 (OG408_18375) - 4283523..4284098 (-) 576 WP_323178042.1 SigE family RNA polymerase sigma factor -
  OG408_RS18350 (OG408_18380) - 4284458..4285522 (-) 1065 WP_326670844.1 aspartate-semialdehyde dehydrogenase -
  OG408_RS18355 (OG408_18385) - 4285519..4286790 (-) 1272 WP_266780165.1 aspartate kinase -
  OG408_RS18360 (OG408_18390) - 4287109..4287768 (-) 660 WP_266780166.1 DUF5063 domain-containing protein -
  OG408_RS18365 (OG408_18395) recR 4287870..4288469 (-) 600 WP_266780167.1 recombination mediator RecR Machinery gene
  OG408_RS18370 (OG408_18400) - 4288591..4288926 (-) 336 WP_266786253.1 YbaB/EbfC family nucleoid-associated protein -
  OG408_RS18375 (OG408_18405) - 4289305..4290099 (+) 795 WP_266780168.1 SLATT domain-containing protein -
  OG408_RS18380 (OG408_18410) - 4290153..4290803 (-) 651 WP_266780169.1 hypothetical protein -
  OG408_RS18385 (OG408_18415) - 4290932..4291696 (-) 765 WP_326670845.1 GntR family transcriptional regulator -
  OG408_RS18390 (OG408_18420) - 4291763..4293124 (-) 1362 WP_326670846.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21884.20 Da        Isoelectric Point: 5.1721

>NTDB_id=661332 OG408_RS18365 WP_266780167.1 4287870..4288469(-) (recR) [Streptomyces sp. NBC_01257]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEECGICRDPRRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=661332 OG408_RS18365 WP_266780167.1 4287870..4288469(-) (recR) [Streptomyces sp. NBC_01257]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGACGGACGTGCGCCGCCTCGCCCACGCCCTGCTGGAGGTCAAGGACAAGGTCC
GTTTCTGCGCCGTCTGCGGCAACGTGGCCCAGCAGGAGGAGTGCGGGATCTGCCGCGACCCGCGCCGGGACCGGACGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGTTACCACGTCCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGTCCCGACGATCTGCGCATCCGCGAGCTGCTGGCCCGGCTCGCCGACGGCT
CCATCACCGAACTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGGCTGCGCGTCACCCGGCTGGCCAGCGGTCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457