Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG322_RS19880 Genome accession   NZ_CP108464
Coordinates   4450808..4451407 (+) Length   199 a.a.
NCBI ID   WP_123460165.1    Uniprot ID   A0A561UXK7
Organism   Streptomyces sp. NBC_01260     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4445808..4456407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG322_RS19855 (OG322_19880) - 4446135..4447508 (+) 1374 WP_123460169.1 aspartate aminotransferase family protein -
  OG322_RS19860 (OG322_19885) - 4447614..4448378 (+) 765 WP_329306754.1 GntR family transcriptional regulator -
  OG322_RS19865 (OG322_19890) - 4448485..4449135 (+) 651 WP_123460167.1 hypothetical protein -
  OG322_RS19870 (OG322_19895) - 4449219..4449992 (-) 774 WP_123462102.1 SLATT domain-containing protein -
  OG322_RS19875 (OG322_19900) - 4450378..4450713 (+) 336 WP_123460166.1 YbaB/EbfC family nucleoid-associated protein -
  OG322_RS19880 (OG322_19905) recR 4450808..4451407 (+) 600 WP_123460165.1 recombination mediator RecR Machinery gene
  OG322_RS19885 (OG322_19910) - 4451533..4452192 (+) 660 WP_123460164.1 DUF5063 domain-containing protein -
  OG322_RS19890 (OG322_19915) - 4452342..4452731 (-) 390 WP_329306755.1 hypothetical protein -
  OG322_RS19895 (OG322_19920) - 4452839..4453171 (+) 333 WP_123460162.1 helix-turn-helix transcriptional regulator -
  OG322_RS19900 (OG322_19925) - 4453172..4453573 (-) 402 WP_124284422.1 hypothetical protein -
  OG322_RS19905 (OG322_19930) - 4453658..4454458 (+) 801 WP_123462099.1 helix-turn-helix transcriptional regulator -
  OG322_RS19910 (OG322_19935) - 4454455..4454709 (+) 255 WP_123460160.1 DUF397 domain-containing protein -
  OG322_RS19915 (OG322_19940) - 4455033..4455968 (+) 936 WP_329306756.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21854.21 Da        Isoelectric Point: 5.1558

>NTDB_id=661192 OG322_RS19880 WP_123460165.1 4450808..4451407(+) (recR) [Streptomyces sp. NBC_01260]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAICGNVAQQEQCGICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=661192 OG322_RS19880 WP_123460165.1 4450808..4451407(+) (recR) [Streptomyces sp. NBC_01260]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTTCAGGCGGAGCCCACGGATGTGCGCCGCCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGCGCGATCTGCGGCAACGTGGCGCAGCAGGAGCAGTGCGGGATCTGCCGCGACCCGCGCCGCGATCTGACGGTC
ATCTGCGTCGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCCGATACCACGTACTCGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGTCCGGACGATCTGCGCATCCGCGAGCTGCTGGCCCGGCTGGCCGACGGCT
CCATCACGGAGCTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGGCTGCGGGTGACACGGCTGGCCAGCGGTCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A561UXK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.155

97.487

0.538
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462