Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   M3B_RS08310 Genome accession   NZ_AP014596
Coordinates   1570377..1570967 (-) Length   196 a.a.
NCBI ID   WP_002985850.1    Uniprot ID   A0A9X8T4H8
Organism   Streptococcus pyogenes strain M3-b     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565377..1575967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3B_RS08275 (M3B_1683) - 1565559..1565951 (-) 393 WP_002985833.1 DUF5684 domain-containing protein -
  M3B_RS08280 (M3B_1684) rsmI 1565978..1566841 (-) 864 WP_011054222.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M3B_RS08285 (M3B_1685) yabA 1566846..1567169 (-) 324 WP_011054221.1 DNA replication initiation control protein YabA -
  M3B_RS10225 (M3B_1687) - 1567668..1567814 (-) 147 WP_227868520.1 hypothetical protein -
  M3B_RS08295 (M3B_1688) - 1567833..1568708 (-) 876 WP_011054220.1 DNA polymerase III subunit delta' -
  M3B_RS08300 (M3B_1689) tmk 1568726..1569361 (-) 636 WP_011054219.1 dTMP kinase -
  M3B_RS08305 (M3B_1690) - 1569610..1569885 (-) 276 WP_002985847.1 YlbG family protein -
  M3B_RS08310 (M3B_1691) clpP 1570377..1570967 (-) 591 WP_002985850.1 ATP-dependent Clp protease proteolytic subunit Regulator
  M3B_RS08320 (M3B_1692) upp 1571190..1571819 (-) 630 WP_002985854.1 uracil phosphoribosyltransferase -
  M3B_RS08325 (M3B_1693) - 1571987..1573621 (-) 1635 WP_011054218.1 polysaccharide biosynthesis protein -
  M3B_RS08330 (M3B_1694) - 1573709..1575154 (+) 1446 WP_011054217.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21648.88 Da        Isoelectric Point: 5.2834

>NTDB_id=66119 M3B_RS08310 WP_002985850.1 1570377..1570967(-) (clpP) [Streptococcus pyogenes strain M3-b]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGK
TIKQIHKDAERDYWMSAEETLAYGFIDEIMENNELK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=66119 M3B_RS08310 WP_002985850.1 1570377..1570967(-) (clpP) [Streptococcus pyogenes strain M3-b]
ATGATTCCTGTTGTTATTGAACAAACTAGCCGTGGAGAACGTTCTTATGACATTTATTCACGTTTATTAAAAGACCGTAT
TATCATGTTAACAGGGCCTGTCGAAGACAACATGGCCAACTCTGTCATAGCGCAGCTCTTATTCCTTGACGCGCAAGACA
ACACGAAAGATATCTACCTATATGTCAACACACCAGGTGGCTCTGTCTCAGCAGGCTTGGCTATTGTCGATACCATGAAC
TTTATCAAGGCCGATGTGCAAACTATTGTCATGGGTATGGCAGCTTCTATGGGGACAGTCATTGCTTCATCAGGAACAAA
AGGCAAACGCTTTATGTTACCAAATGCAGAGTATATGATCCACCAGCCAATGGGTGGCACAGGCGGTGGCACGCAACAAA
CGGATATGGCTATCGCAGCAGAACATCTCTTAAAAACACGTCACCGTTTAGAAAAAATCTTAGCGCAAAATGCTGGGAAA
ACGATTAAACAAATTCATAAAGATGCTGAGCGTGATTATTGGATGAGTGCTGAAGAAACCTTGGCTTACGGTTTCATTGA
TGAAATCATGGAAAACAACGAACTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes MGAS315

100

100

1
  clpP Streptococcus pyogenes JRS4

100

100

1
  clpP Streptococcus mutans UA159

90.816

100

0.908
  clpP Streptococcus pneumoniae Rx1

90.769

99.49

0.903
  clpP Streptococcus pneumoniae D39

90.769

99.49

0.903
  clpP Streptococcus pneumoniae R6

90.769

99.49

0.903
  clpP Streptococcus pneumoniae TIGR4

90.769

99.49

0.903
  clpP Streptococcus thermophilus LMG 18311

89.796

100

0.898
  clpP Streptococcus thermophilus LMD-9

89.796

100

0.898
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

86.224

100

0.862
  clpP Lactococcus lactis subsp. cremoris KW2

85.714

100

0.857
  clpP Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.571
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

98.469

0.561

Multiple sequence alignment