Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MML47_RS05640 Genome accession   NZ_CP092971
Coordinates   1212122..1213516 (-) Length   464 a.a.
NCBI ID   WP_131085161.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain NJ01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207122..1218516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MML47_RS05620 (MML47_05620) - 1207762..1208331 (+) 570 WP_241443249.1 hypothetical protein -
  MML47_RS05625 (MML47_05625) - 1208301..1209827 (+) 1527 WP_053502734.1 hypothetical protein -
  MML47_RS05630 (MML47_05630) pilB 1209862..1211595 (+) 1734 WP_053502736.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MML47_RS05635 (MML47_05635) - 1211604..1212125 (-) 522 WP_277623222.1 Fic family protein -
  MML47_RS05640 (MML47_05640) pilR 1212122..1213516 (-) 1395 WP_131085161.1 sigma-54 dependent transcriptional regulator Regulator
  MML47_RS05645 (MML47_05645) - 1213847..1215460 (-) 1614 WP_131085159.1 HAMP domain-containing sensor histidine kinase -
  MML47_RS05650 (MML47_05650) sucC 1215694..1216863 (+) 1170 WP_019300809.1 ADP-forming succinate--CoA ligase subunit beta -
  MML47_RS05655 (MML47_05655) sucD 1216888..1217763 (+) 876 WP_019300808.1 succinate--CoA ligase subunit alpha -
  MML47_RS05660 (MML47_05660) - 1218083..1218379 (+) 297 WP_011408075.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50187.57 Da        Isoelectric Point: 6.3800

>NTDB_id=661184 MML47_RS05640 WP_131085161.1 1212122..1213516(-) (pilR) [Xanthomonas oryzae strain NJ01]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=661184 MML47_RS05640 WP_131085161.1 1212122..1213516(-) (pilR) [Xanthomonas oryzae strain NJ01]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGTCAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCG
CAGCTGGCCGCAGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGA
CGCACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCC
GTGGAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

99.784

0.634
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489