Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG226_RS22915 Genome accession   NZ_CP108463
Coordinates   5220859..5222268 (+) Length   469 a.a.
NCBI ID   WP_328680450.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01261     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5215859..5227268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG226_RS22900 (OG226_22860) - 5217067..5217999 (-) 933 WP_328680444.1 Ppx/GppA phosphatase family protein -
  OG226_RS22905 (OG226_22865) - 5218083..5218940 (+) 858 WP_329349874.1 hypothetical protein -
  OG226_RS22910 (OG226_22870) - 5218951..5220660 (-) 1710 WP_329349875.1 hypothetical protein -
  OG226_RS22915 (OG226_22875) radA/sms 5220859..5222268 (+) 1410 WP_328680450.1 DNA repair protein RadA Machinery gene
  OG226_RS22920 (OG226_22880) disA 5222405..5223463 (+) 1059 WP_328686396.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG226_RS22925 (OG226_22885) - 5223489..5224301 (-) 813 WP_329349876.1 hypothetical protein -
  OG226_RS22930 (OG226_22890) - 5224505..5225449 (+) 945 WP_329349877.1 A/G-specific adenine glycosylase -
  OG226_RS22935 (OG226_22895) - 5225791..5226330 (+) 540 WP_019064956.1 SigE family RNA polymerase sigma factor -
  OG226_RS22940 (OG226_22900) - 5226441..5227034 (+) 594 WP_328686397.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49587.68 Da        Isoelectric Point: 7.9930

>NTDB_id=661090 OG226_RS22915 WP_328680450.1 5220859..5222268(+) (radA/sms) [Streptomyces sp. NBC_01261]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTSPGRVTTSAVPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIKAIDDNLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVLEVADIGDALQVLPRSRKREAPRDAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=661090 OG226_RS22915 WP_328680450.1 5220859..5222268(+) (radA/sms) [Streptomyces sp. NBC_01261]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGTTGGCAGACGGCCAAGTGGCT
CGGCCGCTGTTCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGGACGACCTCCCCCGGCC
GCGTCACCACCTCCGCGGTACCGATCGGCCAGGTCGACGGCCGCACGGCCACCGCCCGCTCGACCGGCGTCCCCGAGCTG
GACCGGGTCCTCGGCGGCGGCCTGGTCCCCGGAGCCGTGGTCCTCGTAGCGGGCGAACCGGGCGTGGGCAAGTCGACTCT
CCTCCTCGACGTGGCGGCCAAGTCGGCGAGCGAGGAGCACCGCACGCTCTACGTCACCGGCGAGGAGTCGGCGAGCCAGG
TCCGCCTCCGCGCCGACCGCATCAAGGCGATCGACGACAACCTCTACCTCGCCGCCGAGACCGATCTGGCCACGATCCTG
GGCCACTTGGACGCGGTGAAGCCCTCCCTCCTGATCCTGGACTCCGTCCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
ACCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTGGAGCACCTGGTCGACGTGGTGCTCTCCTTC
GAGGGCGACCGCCACGCCCGCCTCCGTCTCGTACGGGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCGGAGCCGGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCTTGGTGGCCGAGGTCCAGGCCCTCACGGTCGACTCCCAGATC
CCCTCCCCCCGCCGTACCACTTCGGGCCTGGAGACATCCCGGGTCTCGATGATGCTCGCGGTCCTGGAACAGCGCGGAAA
GATCAGCGCCCTGGGCAAAAGGGACATCTACTCGGCGACGGTGGGCGGAGTGAAACTCTCCGAACCAGCGGCAGATCTGG
CCATCGCGCTCGCCCTGGCCTCCGCCGCAAGCGACACCCCCCTCCCCAAGAACCTGGTGGCGATCGGCGAAGTAGGCCTC
GCGGGCGAGGTCAGAAGGGTCACGGGCGTCCAGCGCAGACTCTCCGAAGCACACCGTCTGGGCTTCACCCACGCCCTCGT
TCCGAGCGACCCGGGCAAGATCCCGGCAGGCATGAAGGTCCTCGAAGTAGCCGACATAGGAGACGCTCTCCAGGTCCTTC
CAAGGTCCCGTAAGCGAGAGGCCCCACGGGACGCCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus pneumoniae D39

42.316

95.736

0.405
  radA Streptococcus pneumoniae R6

42.316

95.736

0.405
  radA Streptococcus pneumoniae Rx1

42.316

95.736

0.405
  radA Streptococcus pneumoniae TIGR4

42.316

95.736

0.405
  radA Streptococcus mitis NCTC 12261

43.529

90.618

0.394
  radA Streptococcus mitis SK321

43.529

90.618

0.394