Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG757_RS24455 Genome accession   NZ_CP108462
Coordinates   5262654..5263253 (+) Length   199 a.a.
NCBI ID   WP_329316001.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5257654..5268253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG757_RS24430 (OG757_24415) - 5257836..5259101 (+) 1266 WP_329315990.1 FAD-binding protein -
  OG757_RS24435 (OG757_24420) - 5259264..5259401 (+) 138 WP_329315992.1 hypothetical protein -
  OG757_RS24440 (OG757_24425) - 5259482..5260075 (+) 594 WP_329315994.1 HhH-GPD-type base excision DNA repair protein -
  OG757_RS24445 (OG757_24430) - 5260118..5262169 (+) 2052 WP_329315996.1 DNA polymerase III subunit gamma and tau -
  OG757_RS24450 (OG757_24435) - 5262287..5262622 (+) 336 WP_329315998.1 YbaB/EbfC family nucleoid-associated protein -
  OG757_RS24455 (OG757_24440) recR 5262654..5263253 (+) 600 WP_329316001.1 recombination mediator RecR Machinery gene
  OG757_RS24460 (OG757_24445) - 5263246..5263893 (+) 648 WP_329316003.1 DUF5063 domain-containing protein -
  OG757_RS24465 (OG757_24450) - 5264011..5265282 (+) 1272 WP_329316005.1 aspartate kinase -
  OG757_RS24470 (OG757_24455) - 5265691..5266266 (+) 576 WP_329322115.1 SigE family RNA polymerase sigma factor -
  OG757_RS24475 (OG757_24460) - 5266263..5267324 (+) 1062 WP_329316007.1 hypothetical protein -
  OG757_RS24480 (OG757_24465) - 5267382..5268215 (+) 834 WP_329316009.1 SURF1 family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21777.04 Da        Isoelectric Point: 5.4213

>NTDB_id=661008 OG757_RS24455 WP_329316001.1 5262654..5263253(+) (recR) [Streptomyces sp. NBC_01262]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQADPADVRRLAHALAEVKAKVRFCTVCGNVAESEECRVCRDPRRDRSV
ICVVEESKDVVAVERTREFRGRYHVLGGAISPIEGIGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=661008 OG757_RS24455 WP_329316001.1 5262654..5263253(+) (recR) [Streptomyces sp. NBC_01262]
GTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTGGGTCCCAAGAGCGCCCAGCGCAT
CGCCTTCCACATCCTCCAGGCCGACCCCGCCGACGTCCGCCGGCTCGCCCACGCCCTCGCCGAGGTCAAGGCCAAGGTCC
GCTTCTGCACCGTCTGCGGCAACGTGGCCGAGTCCGAGGAGTGCCGCGTCTGCCGCGACCCCCGCCGGGACCGCTCCGTG
ATCTGTGTCGTCGAGGAGTCCAAGGACGTCGTCGCCGTCGAGCGCACCCGCGAGTTCCGCGGCCGCTACCACGTCCTCGG
CGGCGCCATCAGCCCCATCGAGGGCATCGGCCCGGACGACCTGCGCATACGAGAACTCCTGGCCCGGCTCGCCGACGGCA
CCGTCACCGAGCTCATCCTGGCCACCGACCCGAATCTGGAGGGCGAGGCCACAGCGACGTATCTCGCCCGTATGGTCAAG
CCCATGGGGCTCAAGGTCACCCGTCTCGCCAGCGGCCTGCCGGTCGGCGGGGACTTGGAATACGCGGACGAGGTCACGCT
CGGCCGAGCTTTTGAGGGAAGGCGACTCCTTGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462