Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG757_RS19175 Genome accession   NZ_CP108462
Coordinates   4172255..4173643 (+) Length   462 a.a.
NCBI ID   WP_329314090.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4167255..4178643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG757_RS19155 (OG757_19120) - 4167635..4168438 (-) 804 WP_329322021.1 sugar phosphate isomerase/epimerase -
  OG757_RS19160 (OG757_19125) - 4168602..4169540 (-) 939 WP_329314084.1 Ppx/GppA phosphatase family protein -
  OG757_RS19165 (OG757_19130) - 4169639..4170433 (+) 795 WP_329314086.1 hypothetical protein -
  OG757_RS19170 (OG757_19135) - 4170430..4171965 (-) 1536 WP_329314088.1 sigma-70 family RNA polymerase sigma factor -
  OG757_RS19175 (OG757_19140) radA/sms 4172255..4173643 (+) 1389 WP_329314090.1 DNA repair protein RadA Machinery gene
  OG757_RS19180 (OG757_19145) disA 4173711..4174835 (+) 1125 WP_329314092.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG757_RS19185 (OG757_19150) - 4174859..4175668 (-) 810 WP_329314094.1 hypothetical protein -
  OG757_RS19190 (OG757_19155) - 4175817..4176689 (+) 873 WP_329314096.1 A/G-specific adenine glycosylase -
  OG757_RS19195 (OG757_19160) - 4176939..4177487 (+) 549 WP_329322023.1 SigE family RNA polymerase sigma factor -
  OG757_RS19200 (OG757_19165) - 4177472..4178116 (+) 645 WP_329314098.1 hypothetical protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48799.05 Da        Isoelectric Point: 8.2584

>NTDB_id=660993 OG757_RS19175 WP_329314090.1 4172255..4173643(+) (radA/sms) [Streptomyces sp. NBC_01262]
MAARTRTTAKDRPSYRCNECGWTTIKWLGRCGECQAWGTVEEQGGAPAVRTTAPGRVTTAAKPIGEVDIRQATARPTGVP
ELDRVLGGGLIPGAVVLLAGEPGVGKSTLLLDVAAKAASDRHRTLYVTAEESASQVRLRADRIGALSDHLYLAAETDLSA
VLGHLDDVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLIRGIKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDT
QIPSPRRTTSGLENSRVSMMLAVLEQRGRIKAIGKQDIYTATVGGVKLTEPAADLAVALALASAAIDTPLPKNLVAVGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRIPAGMKVTEVADIGDALRVLPKRSPRP

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=660993 OG757_RS19175 WP_329314090.1 4172255..4173643(+) (radA/sms) [Streptomyces sp. NBC_01262]
ATGGCTGCCCGCACCCGTACCACCGCCAAGGACCGTCCCTCCTACCGCTGCAACGAATGCGGGTGGACGACGATCAAATG
GCTGGGCCGCTGCGGCGAGTGCCAGGCCTGGGGCACCGTGGAGGAGCAGGGCGGCGCCCCGGCGGTCCGCACCACCGCGC
CCGGCCGGGTCACGACCGCGGCCAAGCCGATCGGCGAGGTCGACATCCGCCAGGCCACCGCGCGCCCCACCGGCGTGCCC
GAGCTGGACCGCGTCCTGGGCGGCGGCCTGATCCCCGGCGCCGTGGTGCTGCTCGCGGGCGAGCCGGGGGTCGGCAAGTC
CACGCTGCTGCTGGATGTGGCGGCCAAGGCGGCGAGCGATCGCCACCGCACCCTCTACGTCACGGCCGAGGAGTCCGCGT
CGCAGGTGAGGCTGCGCGCCGACCGTATCGGCGCGCTGTCCGACCACCTCTACCTCGCCGCCGAGACCGACCTGTCCGCC
GTCCTGGGCCACCTGGACGACGTCAAGCCGAGCCTGCTGATCCTGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGA
CGGCGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCCCTGATCCGGGCATCCAAGGAGCGCGGCATGTCCA
CGCTGCTCGTGGGCCATGTCACGAAGGACGGCGCCATCGCCGGCCCCCGCCTGCTGGAACACCTCGTGGACGTCGTCCTG
TCCTTCGAGGGCGACCGGCACGCCCGGCTGCGCCTCATCCGCGGCATCAAGAACCGCTACGGCGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGCATCACCGGCCTCACCGACCCCTCCGGCCTGTTCCTGACCCGCCGCGACGAGCCGG
TGCCCGGCACCTGCCTCACCGTCACCCTGGAGGGCAAGCGGCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGACACG
CAGATCCCCTCCCCCCGCCGGACCACCTCCGGCCTGGAGAACTCGCGGGTGTCGATGATGCTCGCCGTCCTGGAGCAGCG
CGGCCGGATCAAGGCCATCGGCAAGCAGGACATCTACACCGCCACCGTCGGCGGCGTGAAACTCACAGAACCCGCCGCGG
ACCTCGCCGTCGCCCTCGCGCTCGCCAGCGCCGCCATCGACACACCGCTGCCGAAAAACCTCGTCGCGGTGGGCGAGGTC
GGCCTCGCGGGCGAGGTCAGGCGGGTCACGGGCGTCCAGCGCCGGCTCGCCGAAGCGCACCGGCTGGGCTTCACCCACGC
CCTCGTACCGACGGATCCCGGCCGGATTCCGGCCGGGATGAAAGTGACCGAAGTGGCGGACATAGGGGACGCACTACGCG
TCCTGCCCAAGAGGAGCCCACGCCCCTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(80-224)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(15-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.826

98.052

0.42
  radA Streptococcus pneumoniae Rx1

42.667

97.403

0.416
  radA Streptococcus pneumoniae D39

42.667

97.403

0.416
  radA Streptococcus pneumoniae R6

42.667

97.403

0.416
  radA Streptococcus pneumoniae TIGR4

42.667

97.403

0.416
  radA Streptococcus mitis SK321

43.897

92.208

0.405
  radA Streptococcus mitis NCTC 12261

43.897

92.208

0.405