Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG295_RS18240 Genome accession   NZ_CP108442
Coordinates   4102865..4103464 (+) Length   199 a.a.
NCBI ID   WP_030228593.1    Uniprot ID   A0A2K8PJG4
Organism   Streptomyces sp. NBC_01276     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4097865..4108464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG295_RS18215 (OG295_18230) - 4098371..4099723 (+) 1353 WP_371677820.1 aspartate aminotransferase family protein -
  OG295_RS18220 (OG295_18235) - 4099854..4100525 (+) 672 WP_371677821.1 GntR family transcriptional regulator -
  OG295_RS18225 (OG295_18240) - 4100659..4101309 (+) 651 WP_371677822.1 hypothetical protein -
  OG295_RS18230 (OG295_18245) - 4101412..4102143 (-) 732 WP_371677823.1 SLATT domain-containing protein -
  OG295_RS18235 (OG295_18250) - 4102414..4102758 (+) 345 WP_078950239.1 YbaB/EbfC family nucleoid-associated protein -
  OG295_RS18240 (OG295_18255) recR 4102865..4103464 (+) 600 WP_030228593.1 recombination mediator RecR Machinery gene
  OG295_RS18245 (OG295_18260) - 4103457..4104104 (+) 648 WP_371677824.1 DUF5063 domain-containing protein -
  OG295_RS18250 (OG295_18265) - 4104215..4105489 (+) 1275 WP_266840016.1 aspartate kinase -
  OG295_RS18255 (OG295_18270) - 4105486..4106559 (+) 1074 WP_371677825.1 aspartate-semialdehyde dehydrogenase -
  OG295_RS18260 (OG295_18275) - 4107008..4107556 (+) 549 WP_371681225.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21771.16 Da        Isoelectric Point: 5.4123

>NTDB_id=660756 OG295_RS18240 WP_030228593.1 4102865..4103464(+) (recR) [Streptomyces sp. NBC_01276]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKAKVRFCAVCGNVAQEERCGICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=660756 OG295_RS18240 WP_030228593.1 4102865..4103464(+) (recR) [Streptomyces sp. NBC_01276]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGCCAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCGGGATCTGCCGTGACCCGCGCCGCGACACGACGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAATTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCCATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATCCGCGAGCTGCTCGCGCGCCTCGCGGACGGGA
CGGTCACCGAGCTGATCCTGGCGACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8PJG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467