Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   MLC69_RS17450 Genome accession   NZ_CP092830
Coordinates   3857136..3859361 (-) Length   741 a.a.
NCBI ID   WP_078049002.1    Uniprot ID   -
Organism   Pseudomonas azotoformans strain ZY-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3852136..3864361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLC69_RS17415 (MLC69_17415) murB 3852531..3853550 (-) 1020 WP_078048998.1 UDP-N-acetylmuramate dehydrogenase -
  MLC69_RS17420 (MLC69_17420) - 3853547..3854011 (-) 465 WP_025858159.1 low molecular weight protein-tyrosine-phosphatase -
  MLC69_RS17425 (MLC69_17425) kdsB 3854011..3854775 (-) 765 WP_078048999.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MLC69_RS17430 (MLC69_17430) - 3854772..3854957 (-) 186 WP_003174668.1 Trm112 family protein -
  MLC69_RS17435 (MLC69_17435) lpxK 3854982..3855992 (-) 1011 WP_078049000.1 tetraacyldisaccharide 4'-kinase -
  MLC69_RS17440 (MLC69_17440) - 3855992..3856420 (-) 429 WP_078049001.1 biopolymer transporter ExbD -
  MLC69_RS17445 (MLC69_17445) exbB 3856417..3857052 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MLC69_RS17450 (MLC69_17450) comA 3857136..3859361 (-) 2226 WP_078049002.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MLC69_RS17455 (MLC69_17455) - 3859497..3860012 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  MLC69_RS17460 (MLC69_17460) - 3860009..3861379 (-) 1371 WP_078049003.1 sensor histidine kinase -
  MLC69_RS17465 (MLC69_17465) - 3861366..3862094 (-) 729 WP_078049004.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80608.72 Da        Isoelectric Point: 11.1182

>NTDB_id=660634 MLC69_RS17450 WP_078049002.1 3857136..3859361(-) (comA) [Pseudomonas azotoformans strain ZY-1]
MRTGMFAFALGLLALRFLPALPATGWLIALLVLALMLLPFRTYPLAFFLVGLSWACISAQWALDDRLRPALDGQTRWVEG
WVTGLPQQTGEGVRFVLTDSRSRNARLPTRIRVSWRGGPLVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPARNAWRDSVRQRLMAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
IAGLARYGCWPRSWPWLPWACGLAFGAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWRVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLPLPFVGEGLLWLAGGALDGLFKGLGWLAGQVPAWIPADVPLGYWLVSLLGAVLLLLPKGVPFRVLGWPMLLLAV
FPPREWVPHGQVDVVQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVGALDLMLLSHADADHAGGA
AAIAKGLPIKRVVGGETDGLPAFLGTQPCISGERWTWDGVTFELWQWPDAITGNPKSCVLRVQANGERLLLTGDIDRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWAFLERLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=660634 MLC69_RS17450 WP_078049002.1 3857136..3859361(-) (comA) [Pseudomonas azotoformans strain ZY-1]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGCTGCTGGCGCTGCGTTTTTTACCCGCGTTGCCCGCTACCGGCTGGCT
GATCGCCTTGCTGGTGCTGGCATTGATGCTGTTGCCATTTCGCACTTACCCCTTGGCGTTTTTCTTGGTGGGGCTGAGCT
GGGCCTGCATCAGCGCACAGTGGGCGCTGGATGATCGCCTACGGCCAGCATTGGACGGCCAGACACGCTGGGTGGAAGGG
TGGGTGACCGGGTTGCCGCAACAGACGGGCGAGGGCGTGCGTTTCGTGCTGACCGACAGTCGGTCGCGTAATGCCCGCTT
GCCCACACGCATTCGCGTCTCCTGGCGTGGCGGGCCGTTGGTGCGCAGTGGCGAGCGCTGGCGCCTGGCGGTCACCCTCA
AGCGACCAGCCGGGCTATTGAATTTCCACGGCTTTGATCAGGAGGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACCGGC
ACGGTAAAGGACGGCGAGCGCCTGGCACCTGCACGCAATGCCTGGCGCGACAGTGTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGGGAGGCGGGCCTGATTGCGCTGGTACTGGGTGATGGCTCTGGATTGGCCGCCGCCGATTGGCAGGTCT
TGCAGGACACGGGCACTGTGCACCTGCTGGTCATCTCCGGCCAACACATCGGTTTGCTGGCGGGCTTGATCTACGCGTTG
ATCGCCGGGTTGGCGCGCTACGGCTGCTGGCCCCGCAGCTGGCCTTGGTTGCCTTGGGCGTGTGGCCTGGCGTTCGGCGC
CGCGCTGGGGTATGGCTTGCTGGCAGGCTTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGGGTTGGTGTTGTTGT
GGCGGTTGCGATTCCGGCATCTGGGACTGTGGTGGCCTTTGCTGCTGGCACTCAATGGGGTGCTGGTCCTGGAGCCGTTG
GCGAGCCTGCAACCCGGTTTCTGGCTGTCGTTTGCGGCGGTGGCGGTGTTGATCCTGGCGTTCGGTGGGCGGCTGGGCCC
CTGGCGCGTGTGGCAGGCGTGGACCCGGCCGCAATGGCTGATTGCTATTGGGTTGTTCCCGGTGCTGCTGGTGTTGGGGC
TGCCCATCAGCCTGAGTGCACCGTTCGCCAACCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTACTGCCGCTGGCGTTG
CTCGGGACGGCGTTGCTGCCGCTGCCGTTTGTGGGTGAAGGCTTGCTGTGGCTGGCGGGCGGTGCACTGGATGGGTTATT
CAAGGGCTTGGGCTGGTTGGCCGGGCAGGTGCCGGCGTGGATTCCGGCCGATGTGCCGTTGGGCTATTGGCTGGTGAGTC
TGCTCGGCGCCGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCCGTG
TTTCCACCACGTGAATGGGTGCCCCATGGGCAGGTCGACGTGGTGCAGTTGGACGTCGGGCAGGGGCAGTCGTTGATCTT
GCGCACCCGTCACCATACCTTGCTGTATGACGCTGGCCCGCGCTCCGGAACCTTTGACCTCGGCGCGCGGGTGGTGCTGC
CATCGCTGCGAAAACTGGGGGTAGGGGCGTTGGACCTGATGCTGCTCAGCCATGCCGACGCAGATCATGCCGGCGGTGCG
GCGGCGATTGCCAAGGGCCTGCCGATCAAGCGCGTGGTGGGTGGAGAAACCGACGGGCTGCCGGCCTTTCTCGGCACTCA
GCCGTGTATCAGTGGCGAGCGCTGGACCTGGGACGGTGTGACCTTTGAACTCTGGCAGTGGCCTGATGCTATTACCGGCA
ACCCGAAGTCCTGTGTGTTGCGGGTGCAGGCCAATGGCGAGCGTCTGTTGCTGACCGGCGACATCGACCGCGCCGCCGAA
CAGGCCATGCTCGCCTCACCCCTGGCGGTGCCGACCGATTGGTTGCAAGCGCCGCACCATGGCAGTCGCAGCTCTTCGTC
CTGGGCGTTCCTGGAGCGCCTCGCGCCGCGTTCCGTGCTTATTTCGCGGGGGCGTAGCAATGCGTTCGGCCATCCCCATC
CTCAGGTGATGGCGCGTTACCAGCGGCTGGGTAGCCAGGTGTATGACAGCGCCGAGCAGGGGGCGGTGCGCCTGCAATTG
GGCGCTTTCGCGCCACCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGGCTACCTTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.833

97.166

0.591
  comA Ralstonia pseudosolanacearum GMI1000

35.597

100

0.382