Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MK860_RS11760 Genome accession   NZ_CP092829
Coordinates   2320008..2320301 (-) Length   97 a.a.
NCBI ID   WP_003217322.1    Uniprot ID   -
Organism   Bacillus pumilus strain MS32     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2315008..2325301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS11710 (MK860_11660) sinR 2315170..2315505 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  MK860_RS11715 (MK860_11665) - 2315573..2316373 (-) 801 WP_044140977.1 TasA family protein -
  MK860_RS11720 (MK860_11670) - 2316432..2317004 (-) 573 WP_278175646.1 signal peptidase I -
  MK860_RS11725 (MK860_11675) tapA 2317056..2317583 (-) 528 WP_278175648.1 amyloid fiber anchoring/assembly protein TapA -
  MK860_RS11730 (MK860_11680) - 2317883..2318161 (+) 279 WP_065098439.1 DUF3889 domain-containing protein -
  MK860_RS11735 (MK860_11685) - 2318195..2318389 (-) 195 WP_106065585.1 YqzE family protein -
  MK860_RS11740 (MK860_11690) comGG 2318449..2318832 (-) 384 WP_106065586.1 competence type IV pilus minor pilin ComGG -
  MK860_RS11745 (MK860_11695) comGF 2318829..2319359 (-) 531 WP_278175651.1 competence type IV pilus minor pilin ComGF -
  MK860_RS11750 (MK860_11700) comGE 2319268..2319585 (-) 318 WP_044140968.1 competence type IV pilus minor pilin ComGE -
  MK860_RS11755 (MK860_11705) comGD 2319569..2320015 (-) 447 WP_106065588.1 competence type IV pilus minor pilin ComGD -
  MK860_RS11760 (MK860_11710) comGC 2320008..2320301 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene
  MK860_RS11765 (MK860_11715) comGB 2320318..2321397 (-) 1080 WP_254110758.1 competence type IV pilus assembly protein ComGB -
  MK860_RS11770 (MK860_11720) comGA 2321339..2322409 (-) 1071 WP_044140966.1 competence type IV pilus ATPase ComGA Machinery gene
  MK860_RS11780 (MK860_11730) - 2323877..2324749 (-) 873 WP_106065590.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10739.69 Da        Isoelectric Point: 7.3837

>NTDB_id=660600 MK860_RS11760 WP_003217322.1 2320008..2320301(-) (comGC) [Bacillus pumilus strain MS32]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=660600 MK860_RS11760 WP_003217322.1 2320008..2320301(-) (comGC) [Bacillus pumilus strain MS32]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCGATTCTTTTACTTATTACCATTCC
GAATATTACTCGTCACCACCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACTCAGGTGATGG
CATATGAATTAGAGCACGATGGCAAGACACCTTCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACG
TGTCCAAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392