Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MK860_RS11525 Genome accession   NZ_CP092829
Coordinates   2282789..2284525 (-) Length   578 a.a.
NCBI ID   WP_113767410.1    Uniprot ID   -
Organism   Bacillus pumilus strain MS32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2277789..2289525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS11505 (MK860_11455) - 2278667..2279767 (-) 1101 WP_065098377.1 Rap family tetratricopeptide repeat protein -
  MK860_RS11510 (MK860_11460) - 2279755..2279952 (-) 198 WP_034661994.1 hypothetical protein -
  MK860_RS11515 (MK860_11465) spo0A 2280224..2281027 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  MK860_RS11520 (MK860_11470) spoIVB 2281313..2282590 (-) 1278 WP_003215755.1 SpoIVB peptidase -
  MK860_RS11525 (MK860_11475) recN 2282789..2284525 (-) 1737 WP_113767410.1 DNA repair protein RecN Machinery gene
  MK860_RS11530 (MK860_11480) argR 2284559..2285008 (-) 450 WP_065098379.1 transcriptional regulator ArgR -
  MK860_RS11535 (MK860_11485) - 2285372..2286226 (-) 855 WP_065098380.1 TlyA family RNA methyltransferase -
  MK860_RS11540 (MK860_11490) dxs 2286223..2288124 (-) 1902 WP_065098381.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MK860_RS11545 (MK860_11495) - 2288275..2289165 (-) 891 WP_265208167.1 polyprenyl synthetase family protein -
  MK860_RS11550 (MK860_11500) - 2289155..2289415 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64829.62 Da        Isoelectric Point: 4.7788

>NTDB_id=660598 MK860_RS11525 WP_113767410.1 2282789..2284525(-) (recN) [Bacillus pumilus strain MS32]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDATDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDNPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLNHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=660598 MK860_RS11525 WP_113767410.1 2282789..2284525(-) (recN) [Bacillus pumilus strain MS32]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCTATCATGATTGACGCTGTCTCACTTCTTGTGGGAGGAAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCTGACCATCCTGTATTTGCTTTA
TGCGAAGAGCAGGGAATTGACGCAACGGATGAAATGATGATTCTTCGCCGTGATATTAACAATAACGGGAAAAGCATTTG
CCGTATCAATGGCAAGCTCGTTACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACACGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTG
TCACAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAGGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAA
GCTATCCGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGCTGGATCAATTAG
AGTTCGACCCAGCACGACTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACAACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGATAGTCACCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCTCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGCAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACGTTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATAATCCGCTACTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCAGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGCGTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCTAAACGCTCTAAAGCAGGCAGAACACTGACAA
GCGTCAAACCATTAAATCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAGCTGACA
AAACAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.913

100

0.749