Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   MK860_RS11515 Genome accession   NZ_CP092829
Coordinates   2280224..2281027 (-) Length   267 a.a.
NCBI ID   WP_003215740.1    Uniprot ID   A0AB34QSQ5
Organism   Bacillus pumilus strain MS32     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2275224..2286027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS11495 (MK860_11445) - 2277433..2277669 (+) 237 WP_003215815.1 DUF2627 domain-containing protein -
  MK860_RS11500 (MK860_11450) - 2277704..2278441 (-) 738 WP_217012202.1 glycerophosphodiester phosphodiesterase -
  MK860_RS11505 (MK860_11455) - 2278667..2279767 (-) 1101 WP_065098377.1 Rap family tetratricopeptide repeat protein -
  MK860_RS11510 (MK860_11460) - 2279755..2279952 (-) 198 WP_034661994.1 hypothetical protein -
  MK860_RS11515 (MK860_11465) spo0A 2280224..2281027 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  MK860_RS11520 (MK860_11470) spoIVB 2281313..2282590 (-) 1278 WP_003215755.1 SpoIVB peptidase -
  MK860_RS11525 (MK860_11475) recN 2282789..2284525 (-) 1737 WP_113767410.1 DNA repair protein RecN Machinery gene
  MK860_RS11530 (MK860_11480) argR 2284559..2285008 (-) 450 WP_065098379.1 transcriptional regulator ArgR -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29946.45 Da        Isoelectric Point: 6.3914

>NTDB_id=660597 MK860_RS11515 WP_003215740.1 2280224..2281027(-) (spo0A) [Bacillus pumilus strain MS32]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRRNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=660597 MK860_RS11515 WP_003215740.1 2280224..2281027(-) (spo0A) [Bacillus pumilus strain MS32]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTGCTTGGCGTGGCGTATAATGGCCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGATGGCCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAA
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCTTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGAAACAAACCTGAACCGAAACGCAGAAACTTAGATGCGAGCATTACAACGATT
ATTCATGAGATTGGCGTCCCGGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCCATTTCAATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATCGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAAC
GAGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATCGATTCCATTTCCTCACTTTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCTGAATTTATCGCAATGGTGGCTGATCGTCTGCGCCTAGAGCATAGGGCAAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884