Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG564_RS26320 Genome accession   NZ_CP108438
Coordinates   5824721..5825722 (+) Length   333 a.a.
NCBI ID   WP_266671507.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01280     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5819721..5830722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG564_RS26295 (OG564_26285) - 5820201..5820872 (+) 672 WP_329437852.1 TetR/AcrR family transcriptional regulator -
  OG564_RS26300 (OG564_26290) - 5821027..5822511 (+) 1485 WP_266671513.1 MFS transporter -
  OG564_RS26305 (OG564_26295) - 5822533..5823045 (-) 513 WP_266671511.1 MarR family transcriptional regulator -
  OG564_RS26310 (OG564_26300) - 5823154..5823915 (+) 762 WP_266676420.1 class III extradiol ring-cleavage dioxygenase -
  OG564_RS26315 (OG564_26305) - 5823994..5824518 (-) 525 WP_266671509.1 GNAT family N-acetyltransferase -
  OG564_RS26320 (OG564_26310) rpoS 5824721..5825722 (+) 1002 WP_266671507.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG564_RS26325 (OG564_26315) - 5825765..5826760 (-) 996 WP_329434801.1 WYL domain-containing protein -
  OG564_RS26330 (OG564_26320) - 5826914..5828416 (+) 1503 WP_329434803.1 MFS transporter -
  OG564_RS26335 (OG564_26325) - 5828499..5829758 (-) 1260 WP_329434804.1 extracellular solute-binding protein -
  OG564_RS26340 (OG564_26330) - 5829830..5830477 (+) 648 WP_266671499.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37246.10 Da        Isoelectric Point: 5.0689

>NTDB_id=660597 OG564_RS26320 WP_266671507.1 5824721..5825722(+) (rpoS) [Streptomyces sp. NBC_01280]
MATRAVARRKSAAGETDGARSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYARQILDGEAESEAAG
KASREELEALVAASERAKDVFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGRDPEPEEIAAELESKPERVVDVLDWARDPVSLNMPVDDEGETQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=660597 OG564_RS26320 WP_266671507.1 5824721..5825722(+) (rpoS) [Streptomyces sp. NBC_01280]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCGCCGGCGAGACCGACGGCGCACGCAGTGTTCGCGCCGTAGGCGG
CGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACACCGCTGCTGGACGCCGCCAAGGAAG
TCGAACTTTCCCAGACCATCGAGGCGGGCGTGTACGCCCGGCAGATCCTCGACGGCGAGGCGGAGAGCGAAGCCGCGGGC
AAGGCGTCCCGCGAGGAGCTCGAAGCGCTCGTCGCCGCGAGTGAGCGGGCCAAGGACGTCTTCATCAAGTCCAATCTGCG
CCTGGTCGTGGCCGTCGCGCGCCGTTACCCGAGGAGCGGTCTCCCGCTCCTCGACCTCATCCAGGAGGGCAACGCGGGCC
TGGTGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACATACGCGACGTGGTGGATCCGGCAGGCC
ATCACGCGCTCGATAGCCGACCAGTCGCGCACGATCCGGCTCCCCGTCCACCTGGTGGAGGAACTGGGCCGCATCCGGCG
CGTACAGCGCGAGTTCAACCGGAAGAACGGGCGGGATCCCGAGCCCGAGGAGATCGCCGCCGAGCTCGAATCCAAGCCCG
AGCGCGTCGTCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGCCGGTGGACGACGAGGGCGAGACCCAG
TTCGGCGACCTCCTGGAGGACACGTCCGCCGTGTCGCCCGAGCAGTCCGTCCTCACGCTGCTGCGCAGCGAGGAGCTGGA
CGACCTCATCGGACGCCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGGATCGACGACGGCCGTGAGCGCA
CGCTCACGGAGGTCGGCAAGGAGCACGGGCTGACCCGCGAGCGGATCCGGCAGATCGAGAAGCACGCCCTTCTCGAGCTG
AAGAAGCTGGCGCGGGACACCGGGTTCGATGCCGCCGCGTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.867

90.39

0.36