Detailed information NTG0660521

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MKK04_RS03145
• Genome accession: NZ_CP092827
• Coordinates: 688119..688985 (-)
• Length: 288 a.a.
• NCBI ID: WP_241106220.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LS.1a
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 683119..693985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKK04_RS03105 (MKK04_03105)	-	683233..684528 (-)	1296	WP_063911149.1	NAD(P)/FAD-dependent oxidoreductase	-
MKK04_RS03110 (MKK04_03110)	-	684613..684786 (-)	174	WP_013970765.1	DUF3094 family protein	-
MKK04_RS03115 (MKK04_03115)	-	684920..685549 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
MKK04_RS03120 (MKK04_03120)	-	685605..686036 (-)	432	WP_241106219.1	hypothetical protein	-
MKK04_RS03125 (MKK04_03125)	-	686122..686829 (+)	708	WP_063911151.1	energy-coupling factor ABC transporter permease	-
MKK04_RS03130 (MKK04_03130)	-	686919..686996 (+)	78	Protein_593	hypothetical protein	-
MKK04_RS03135 (MKK04_03135)	yacG	687299..687499 (-)	201	WP_063911152.1	DNA gyrase inhibitor YacG	-
MKK04_RS03140 (MKK04_03140)	coaE	687496..688119 (-)	624	WP_063911153.1	dephospho-CoA kinase	-
MKK04_RS03145 (MKK04_03145)	pilD	688119..688985 (-)	867	WP_241106220.1	A24 family peptidase	Machinery gene
MKK04_RS03150 (MKK04_03150)	-	688988..690196 (-)	1209	WP_241106221.1	type II secretion system F family protein	-
MKK04_RS03155 (MKK04_03155)	-	690413..690823 (+)	411	WP_233688113.1	pilin	-
MKK04_RS03165 (MKK04_03165)	-	691132..692454 (+)	1323	WP_241106222.1	integrase arm-type DNA-binding domain-containing protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31899.04 Da
• Isoelectric Point: 8.2287

>NTDB_id=660521 MKK04_RS03145 WP_241106220.1 688119..688985(-) (pilD) [Pseudomonas sp. LS.1a]
MTLWTLLAEQPAYFLTLAGVLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPTTPHERFDLWLPASRCPHCAHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVEVASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDVLVL
PMLWLGLIVNAFGLYVPLTSALWGAVAGYLSLWTVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPVTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=660521 MKK04_RS03145 WP_241106220.1 688119..688985(-) (pilD) [Pseudomonas sp. LS.1a]
ATGACTCTATGGACTTTACTGGCTGAGCAGCCGGCGTACTTCCTCACCCTGGCCGGCGTGCTCGGCCTGCTGGTGGGCAG
CTTTCTCAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCCCAGGAGGTATTGGGGT
TGCCGACCACGCCACACGAGCGTTTCGACCTGTGGCTACCCGCCTCGCGCTGCCCGCATTGCGCGCATCGGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGCTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCGTTGGTGGAGGTGGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGGGCTTCGCCCGAGGCCTTGCTGG
CACTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCAATGCTGTGGCTGGGGCTGATCGTCAACGCTTTCGGCCTCTACGTCCCGCTGACCAGTGCGCTGTGGGGCGCGGTGGC
CGGCTACCTCAGCCTGTGGACGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGGTGACCCTGCTGCTGTCGTCGGTGGTGGGGGCG
CTGGCGGGGCTGTGCCTGCTGCGTCTGCGCCGGCATGCCATGGGCACGGCGATCCCGTTCGGCCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCTTCATACACACAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.623	95.833	0.514
pilD	Vibrio campbellii strain DS40M4	49.47	98.264	0.486
pilD	Acinetobacter baumannii D1279779	52.06	92.708	0.483
pilD	Acinetobacter nosocomialis M2	51.311	92.708	0.476
pilD	Neisseria gonorrhoeae MS11	51.321	92.014	0.472