Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG458_RS05620 Genome accession   NZ_CP108435
Coordinates   1279391..1280383 (+) Length   330 a.a.
NCBI ID   WP_164369114.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01281     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1274391..1285383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG458_RS05605 (OG458_05600) - 1275240..1275851 (-) 612 WP_327408128.1 DUF305 domain-containing protein -
  OG458_RS05610 (OG458_05605) - 1275827..1277197 (-) 1371 WP_327408129.1 DUF1996 domain-containing protein -
  OG458_RS05615 (OG458_05610) - 1277341..1279062 (-) 1722 WP_327408130.1 discoidin domain-containing protein -
  OG458_RS05620 (OG458_05615) cytR 1279391..1280383 (+) 993 WP_164369114.1 LacI family DNA-binding transcriptional regulator Regulator
  OG458_RS05625 (OG458_05620) - 1280414..1280785 (-) 372 WP_326841676.1 amphi-Trp domain-containing protein -
  OG458_RS05630 (OG458_05625) - 1281078..1282451 (+) 1374 WP_327408131.1 DUF2252 domain-containing protein -
  OG458_RS05635 (OG458_05630) - 1282611..1283024 (+) 414 WP_164369115.1 SHOCT domain-containing protein -
  OG458_RS05640 (OG458_05635) - 1283855..1284193 (+) 339 WP_327408132.1 cyclic-phosphate processing receiver domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35225.21 Da        Isoelectric Point: 7.2042

>NTDB_id=660472 OG458_RS05620 WP_164369114.1 1279391..1280383(+) (cytR) [Streptomyces sp. NBC_01281]
MKRPTLEVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVHELGYVPNGAARNLVTRRTDTLALVVSDPPQGVVSDDP
LFSAVVRAVSRELEVAGKRLVLMLAESDQSRTRVEQYVAGGHVDGVLLVALHGTDPLPSALARQGLPVVSFNRTSAHDVP
YVALDNAGGAALAVRHLLDRGRRRISTITGPLELHEARERLDGYRRTLRDTGRRSIVALGDFTRVSGAEAMRQLLDDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVVGFDDIEAASYTTPALTSVRSPMADQATAAVHLLLGLIGGGPSKPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=660472 OG458_RS05620 WP_164369114.1 1279391..1280383(+) (cytR) [Streptomyces sp. NBC_01281]
ATGAAGCGCCCCACTCTCGAAGTGGTCGCCGCCCGGGCCGGCGTGTCCAAATCGAGCGTTTCCCGCGTCATCAACGGCGA
GACGACCGTTGCCCCACAGATCCGAGACGTCGTGATGCGCGCTGTCCACGAACTCGGGTACGTGCCCAACGGAGCAGCAC
GCAACCTCGTCACGCGTCGCACCGACACCCTCGCCCTGGTGGTCTCCGACCCGCCGCAAGGCGTCGTGTCCGACGACCCC
CTCTTCTCGGCCGTCGTGCGCGCGGTCAGCCGAGAACTGGAAGTCGCCGGCAAGCGGCTCGTGCTCATGCTCGCGGAGTC
GGACCAGAGTCGTACCAGAGTGGAGCAGTACGTCGCCGGCGGGCACGTGGACGGCGTCCTCCTCGTCGCCCTGCACGGTA
CGGATCCGCTGCCCTCAGCACTGGCCCGGCAGGGCCTGCCCGTCGTCTCCTTCAACCGCACCTCAGCACACGACGTCCCC
TACGTGGCCCTGGACAACGCCGGTGGGGCAGCGCTGGCGGTCCGTCACCTTCTCGACCGTGGCCGCCGCCGTATCTCGAC
CATCACCGGACCGCTCGAACTGCACGAGGCGCGGGAACGCCTCGACGGCTACCGCCGTACGCTCCGCGACACCGGCCGTC
GCTCCATCGTGGCCCTGGGCGACTTCACCAGGGTCTCCGGCGCCGAAGCCATGCGTCAGCTCCTGGATGACGATCCCGAC
CTCGACGCGGTGTTCGCGGCCAACGACCTGATGGCGATCGGAGCCCTTCGCACCCTCCACCAAGCCGGACGCCGCGTCCC
CGAGGACGTCGCCGTCGTCGGCTTCGACGACATAGAGGCCGCGTCCTACACGACCCCCGCCCTCACCTCGGTCCGCAGTC
CCATGGCCGACCAGGCAACCGCCGCCGTCCACCTGCTCCTCGGCCTCATCGGCGGCGGCCCCTCGAAGCCGGTGATCATG
CCGAACGAGCTGGTGGTGCGTGAATCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361