Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   MK848_RS15425 Genome accession   NZ_CP092824
Coordinates   2999553..2999951 (-) Length   132 a.a.
NCBI ID   WP_003246342.1    Uniprot ID   A0AAE2SGH7
Organism   Bacillus subtilis strain S1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2994553..3004951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS15395 (MK848_15375) yckA 2995250..2995930 (-) 681 WP_024572176.1 amino acid ABC transporter permease -
  MK848_RS15400 (MK848_15380) yckB 2995940..2996803 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  MK848_RS15405 (MK848_15385) - 2996965..2997161 (+) 197 Protein_2994 hypothetical protein -
  MK848_RS15410 (MK848_15390) - 2997168..2997515 (+) 348 WP_101172120.1 RDD family protein -
  MK848_RS15415 (MK848_15395) yckD 2997597..2997929 (+) 333 WP_003246247.1 YckD family protein -
  MK848_RS15420 (MK848_15400) bglC 2998083..2999516 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  MK848_RS15425 (MK848_15405) nin/comJ 2999553..2999951 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  MK848_RS15430 (MK848_15410) nucA/comI 2999978..3000427 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  MK848_RS15435 (MK848_15415) tlpC 3000595..3002316 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  MK848_RS15440 (MK848_15420) hxlB 3002427..3002984 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  MK848_RS15445 (MK848_15425) hxlA 3002990..3003622 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  MK848_RS15450 (MK848_15430) hxlR 3003855..3004217 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14996.95 Da        Isoelectric Point: 4.8991

>NTDB_id=660452 MK848_RS15425 WP_003246342.1 2999553..2999951(-) (nin/comJ) [Bacillus subtilis strain S1]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=660452 MK848_RS15425 WP_003246342.1 2999553..2999951(-) (nin/comJ) [Bacillus subtilis strain S1]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTTCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

100

100

1