Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MJT43_RS00040 Genome accession   NZ_CP092823
Coordinates   9254..9829 (+) Length   191 a.a.
NCBI ID   WP_077300999.1    Uniprot ID   -
Organism   Lactobacillus delbrueckii strain DPUL-F36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4254..14829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJT43_RS00025 (MJT43_00025) gyrB 4259..6220 (+) 1962 WP_011677861.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MJT43_RS00030 (MJT43_00030) gyrA 6233..8704 (+) 2472 WP_003622131.1 DNA gyrase subunit A -
  MJT43_RS00035 (MJT43_00035) rpsF 8920..9213 (+) 294 WP_003612647.1 30S ribosomal protein S6 -
  MJT43_RS00040 (MJT43_00040) ssb 9254..9829 (+) 576 WP_077300999.1 single-stranded DNA-binding protein Machinery gene
  MJT43_RS00045 (MJT43_00045) rpsR 9856..10092 (+) 237 WP_003622127.1 30S ribosomal protein S18 -
  MJT43_RS00050 (MJT43_00050) - 10233..12254 (+) 2022 WP_011677864.1 DHH family phosphoesterase -
  MJT43_RS00055 (MJT43_00055) rplI 12277..12732 (+) 456 WP_014564436.1 50S ribosomal protein L9 -
  MJT43_RS00060 (MJT43_00060) dnaB 12756..14126 (+) 1371 WP_215427964.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20552.22 Da        Isoelectric Point: 4.6437

>NTDB_id=660383 MJT43_RS00040 WP_077300999.1 9254..9829(+) (ssb) [Lactobacillus delbrueckii strain DPUL-F36]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=660383 MJT43_RS00040 WP_077300999.1 9254..9829(+) (ssb) [Lactobacillus delbrueckii strain DPUL-F36]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.586
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.597

100

0.466