Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG534_RS16835 Genome accession   NZ_CP108423
Coordinates   3756865..3757464 (-) Length   199 a.a.
NCBI ID   WP_326588872.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3751865..3762464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG534_RS16815 (OG534_16850) - 3752855..3753589 (-) 735 WP_326588868.1 SigE family RNA polymerase sigma factor -
  OG534_RS16820 (OG534_16855) - 3753760..3754833 (-) 1074 WP_326588869.1 aspartate-semialdehyde dehydrogenase -
  OG534_RS16825 (OG534_16860) - 3754830..3756104 (-) 1275 WP_326588870.1 aspartate kinase -
  OG534_RS16830 (OG534_16865) - 3756225..3756872 (-) 648 WP_326588871.1 DUF5063 domain-containing protein -
  OG534_RS16835 (OG534_16870) recR 3756865..3757464 (-) 600 WP_326588872.1 recombination mediator RecR Machinery gene
  OG534_RS16840 (OG534_16875) - 3757501..3757845 (-) 345 WP_094744798.1 YbaB/EbfC family nucleoid-associated protein -
  OG534_RS16845 (OG534_16880) - 3758125..3758871 (+) 747 WP_326588873.1 SLATT domain-containing protein -
  OG534_RS16850 (OG534_16885) - 3759068..3759718 (-) 651 WP_326588874.1 hypothetical protein -
  OG534_RS16855 (OG534_16890) - 3759840..3760505 (-) 666 WP_326588875.1 GntR family transcriptional regulator -
  OG534_RS16860 (OG534_16895) - 3760653..3762023 (-) 1371 WP_326588876.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21958.32 Da        Isoelectric Point: 5.1877

>NTDB_id=660323 OG534_RS16835 WP_326588872.1 3756865..3757464(-) (recR) [Streptomyces sp. NBC_01294]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQTEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCGICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLKRLADGEVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=660323 OG534_RS16835 WP_326588872.1 3756865..3757464(-) (recR) [Streptomyces sp. NBC_01294]
TTGTACGAAGGCGTGGTTCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGACCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTTGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCGGCATCTGCCGCGACCCGCGCCGGGACACCACGGTC
ATCTGTGTCGTGGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCAGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATTTGCGCATCCGTGAGCTGCTGAAGCGGCTGGCGGACGGCG
AGGTGACCGAGCTGATCCTCGCCACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAA
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.122

98.492

0.553
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472