Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG730_RS19380 Genome accession   NZ_CP108414
Coordinates   4298877..4299476 (-) Length   199 a.a.
NCBI ID   WP_243330636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4293877..4304476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG730_RS19360 (OG730_19335) - 4294719..4295414 (-) 696 WP_327309338.1 SigE family RNA polymerase sigma factor -
  OG730_RS19365 (OG730_19340) - 4295721..4296815 (-) 1095 WP_327305403.1 aspartate-semialdehyde dehydrogenase -
  OG730_RS19370 (OG730_19345) - 4296812..4298089 (-) 1278 WP_327305404.1 aspartate kinase -
  OG730_RS19375 (OG730_19350) - 4298237..4298884 (-) 648 WP_327305405.1 DUF5063 domain-containing protein -
  OG730_RS19380 (OG730_19355) recR 4298877..4299476 (-) 600 WP_243330636.1 recombination mediator RecR Machinery gene
  OG730_RS19385 (OG730_19360) - 4299538..4299882 (-) 345 WP_327305406.1 YbaB/EbfC family nucleoid-associated protein -
  OG730_RS19390 (OG730_19365) - 4300152..4300877 (+) 726 WP_327305407.1 SLATT domain-containing protein -
  OG730_RS19395 (OG730_19370) - 4300926..4301576 (-) 651 WP_250744899.1 hypothetical protein -
  OG730_RS19400 (OG730_19375) - 4301695..4304157 (-) 2463 WP_327305408.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21906.26 Da        Isoelectric Point: 5.1721

>NTDB_id=660239 OG730_RS19380 WP_243330636.1 4298877..4299476(-) (recR) [Streptomyces sp. NBC_01298]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCNICRDPRRDLTV
ICVVEESKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSVTELIIATDPNLEGEATATYLARMMK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=660239 OG730_RS19380 WP_243330636.1 4298877..4299476(-) (recR) [Streptomyces sp. NBC_01298]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGATGTCCGCCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCAACATCTGCCGCGATCCGCGCCGCGATCTCACGGTC
ATCTGTGTGGTCGAGGAGTCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAATTCCGGGGGCGGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGACCGGACGATCTGCGCATCCGGGAGCTGCTGGCGCGGCTCGCGGACGGCT
CGGTCACCGAGCTGATCATCGCGACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATGAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

48.454

97.487

0.472