Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG730_RS18525 Genome accession   NZ_CP108414
Coordinates   4109489..4110916 (+) Length   475 a.a.
NCBI ID   WP_327305268.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4104489..4115916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG730_RS18505 (OG730_18480) - 4104585..4105418 (-) 834 WP_327305264.1 sugar phosphate isomerase/epimerase -
  OG730_RS18510 (OG730_18485) - 4105555..4106502 (-) 948 WP_327305265.1 Ppx/GppA phosphatase family protein -
  OG730_RS18515 (OG730_18490) - 4106566..4107423 (+) 858 WP_327305266.1 hypothetical protein -
  OG730_RS18520 (OG730_18495) - 4107443..4109269 (-) 1827 WP_327305267.1 hypothetical protein -
  OG730_RS18525 (OG730_18500) radA/sms 4109489..4110916 (+) 1428 WP_327305268.1 DNA repair protein RadA Machinery gene
  OG730_RS18530 (OG730_18505) disA 4111121..4112245 (+) 1125 WP_243339766.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG730_RS18535 (OG730_18510) - 4112337..4113173 (-) 837 WP_327305269.1 hypothetical protein -
  OG730_RS18540 (OG730_18515) - 4113363..4113971 (+) 609 WP_327305270.1 phosphatase PAP2 family protein -
  OG730_RS18545 (OG730_18520) - 4114047..4114967 (+) 921 WP_327305271.1 A/G-specific adenine glycosylase -
  OG730_RS18550 (OG730_18525) - 4115157..4115717 (+) 561 WP_327305272.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 49632.84 Da        Isoelectric Point: 8.2465

>NTDB_id=660234 OG730_RS18525 WP_327305268.1 4109489..4110916(+) (radA/sms) [Streptomyces sp. NBC_01298]
MAARTSRSSAKDRPSYRCTECGYSTAKWLGRCPECQAWGTVEELGGAPAVRTTAAGRVTTAAVPIGQVDVRTATARSTGV
SELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALSEHLYLAAETDLS
AVLGHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGTTDEVGCFELTDEGINGLADPSGLFLTRRTEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYTATVGGVKLTEPAADLAVALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAFRLGFTHALVPVDPGKVPAGMKVTEVADMGDALRVLPRGRSRTPAKDAKDAAAGQ

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=660234 OG730_RS18525 WP_327305268.1 4109489..4110916(+) (radA/sms) [Streptomyces sp. NBC_01298]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGTTGTACCGAGTGCGGGTACTCCACCGCCAA
GTGGCTCGGCCGGTGCCCCGAGTGCCAGGCCTGGGGCACCGTCGAGGAGCTCGGCGGCGCGCCCGCCGTGCGCACCACCG
CGGCCGGCCGGGTCACCACGGCCGCCGTGCCGATCGGGCAGGTCGACGTGCGGACGGCGACCGCGCGCAGCACGGGCGTG
AGCGAGCTGGACCGGGTGCTGGGCGGCGGGCTGGTGCCCGGCGCGGTCGTCCTGCTGGCGGGCGAGCCGGGCGTCGGCAA
GTCCACGCTGCTGCTCGACGTCGCGGCGAAGGCCGCCTCCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCGCTCAGCGAGCACCTCTACCTGGCCGCCGAGACCGATCTGTCC
GCCGTGCTCGGGCACCTCGACGCCGTGAAGCCCTCCCTGCTGATCATGGACTCCGTGCAGACGGTCGCCTCCCCCGAGAT
CGACGGTGCGCCGGGCGGCATGGCGCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGT
CCACGCTGCTGGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGTCCCCGGCTGCTGGAGCACCTGGTCGACGTCGTC
CTGAGCTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTCGTGCGCGGCGTGAAGAACCGGTACGGCACCACGGACGAGGT
CGGCTGCTTCGAGCTCACCGACGAGGGCATCAACGGCCTCGCGGACCCGAGCGGTCTGTTCCTGACCCGCCGCACCGAGG
CCGTCCCCGGCACCTGTCTGACGGTGACCCTGGAGGGCAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGAC
TCGCAGATCCCCTCGCCGCGCCGCACGACCTCCGGGCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGAGCA
GCGCGGGCGGATCACGGCGCTCGGCAAGCGGGACATCTACACCGCGACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCCG
CCGACCTGGCCGTCGCGCTGGCGCTGGCCTCGGCGGCCAGTGACGTACCGCTCCCGAAGAACCTGGTCGCCATCGGGGAG
GTCGGCCTCGCGGGCGAGGTCCGGCGCGTGACGGGCGTGCAGCGGCGGCTCGCGGAGGCGTTCCGGCTGGGCTTCACGCA
CGCGCTGGTGCCGGTGGACCCGGGGAAGGTCCCGGCGGGCATGAAGGTGACCGAGGTCGCGGACATGGGCGACGCCCTAC
GGGTCCTGCCGCGCGGGCGGTCGCGTACGCCGGCCAAGGACGCCAAGGACGCCGCCGCGGGCCAGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(373-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(83-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

95.368

0.406
  radA Streptococcus mitis SK321

44.104

89.263

0.394
  radA Streptococcus pneumoniae Rx1

44.104

89.263

0.394
  radA Streptococcus pneumoniae D39

44.104

89.263

0.394
  radA Streptococcus pneumoniae R6

44.104

89.263

0.394
  radA Streptococcus pneumoniae TIGR4

44.104

89.263

0.394
  radA Streptococcus mitis NCTC 12261

44.104

89.263

0.394