Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG622_RS22420 Genome accession   NZ_CP108394
Coordinates   5129434..5130033 (-) Length   199 a.a.
NCBI ID   WP_371578412.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01314     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5124434..5135033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG622_RS22390 (OG622_22450) - 5124474..5125229 (-) 756 WP_371584177.1 helix-turn-helix transcriptional regulator -
  OG622_RS22395 (OG622_22455) - 5125365..5125805 (+) 441 WP_371578407.1 hypothetical protein -
  OG622_RS22400 (OG622_22460) - 5125798..5126649 (+) 852 WP_371578408.1 alpha/beta fold hydrolase -
  OG622_RS22405 (OG622_22465) - 5126704..5127435 (-) 732 WP_371578409.1 DUF6082 family protein -
  OG622_RS22410 (OG622_22470) - 5127567..5128502 (-) 936 WP_371578410.1 M56 family metallopeptidase -
  OG622_RS22415 (OG622_22475) - 5128779..5129441 (-) 663 WP_371578411.1 DUF5063 domain-containing protein -
  OG622_RS22420 (OG622_22480) recR 5129434..5130033 (-) 600 WP_371578412.1 recombination mediator RecR Machinery gene
  OG622_RS22425 (OG622_22485) - 5130144..5130491 (-) 348 WP_371578413.1 YbaB/EbfC family nucleoid-associated protein -
  OG622_RS22430 (OG622_22490) - 5130747..5131514 (+) 768 WP_371578414.1 SLATT domain-containing protein -
  OG622_RS22435 (OG622_22495) - 5131736..5134009 (-) 2274 WP_371584178.1 protein kinase -
  OG622_RS22440 (OG622_22500) - 5134138..5134623 (-) 486 WP_371578415.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21816.24 Da        Isoelectric Point: 5.1616

>NTDB_id=660152 OG622_RS22420 WP_371578412.1 5129434..5130033(-) (recR) [Streptomyces sp. NBC_01314]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKAKVRFCAICGNVAQEELCGICRDSRRDITV
ICVVEEPKDVVAIERTREFRGRYHILGGAISPIEGVGPDDLRIRELLTRLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=660152 OG622_RS22420 WP_371578412.1 5129434..5130033(-) (recR) [Streptomyces sp. NBC_01314]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGGCGGTTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTACGGCGGCTGGCGCACGCCCTCCTCGAAGTGAAGGCGAAGGTCC
GCTTCTGCGCGATCTGCGGCAACGTCGCTCAGGAGGAGCTGTGCGGCATCTGCCGCGACTCCCGCCGCGACATCACGGTC
ATCTGTGTCGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAACGCACTCGCGAATTCCGGGGCCGGTACCACATCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGCATACGGGAGCTGCTGACCCGTCTGGCCGACGGGA
CGGTCACCGAGCTGATCCTGGCCACGGACCCGAATCTCGAAGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAA
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGCCGCGCCTTCGAGGGGAGACGATTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467