Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG622_RS21250 Genome accession   NZ_CP108394
Coordinates   4855650..4857059 (+) Length   469 a.a.
NCBI ID   WP_371578132.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01314     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4850650..4862059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG622_RS21235 (OG622_21295) - 4851138..4852019 (+) 882 WP_371578127.1 hypothetical protein -
  OG622_RS21240 (OG622_21300) - 4852051..4853772 (-) 1722 WP_371578129.1 hypothetical protein -
  OG622_RS21245 (OG622_21305) - 4853989..4855374 (+) 1386 WP_371578131.1 alpha/beta hydrolase -
  OG622_RS21250 (OG622_21310) radA/sms 4855650..4857059 (+) 1410 WP_371578132.1 DNA repair protein RadA Machinery gene
  OG622_RS21255 (OG622_21315) disA 4857141..4858265 (+) 1125 WP_371578134.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG622_RS21260 (OG622_21320) - 4858369..4859208 (-) 840 WP_371578136.1 hypothetical protein -
  OG622_RS21265 (OG622_21325) - 4859510..4860580 (+) 1071 WP_371578138.1 LLM class flavin-dependent oxidoreductase -
  OG622_RS21270 (OG622_21330) - 4860664..4861581 (+) 918 WP_371578140.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49794.90 Da        Isoelectric Point: 7.4626

>NTDB_id=660145 OG622_RS21250 WP_371578132.1 4855650..4857059(+) (radA/sms) [Streptomyces sp. NBC_01314]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSAVPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAADAEHPTLYVTGEESASQVRLRADRINALHDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGIKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQSLTVDSQL
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAATDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKVPPGMKVLEVADMGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=660145 OG622_RS21250 WP_371578132.1 4855650..4857059(+) (radA/sms) [Streptomyces sp. NBC_01314]
ATGGCTGCCCGTACGAAGACCGCGAAGGACCGTCCGTCCTACCGCTGCACAGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGAACGCCCGCCGTCCGTACGACAGCCCCCGGCC
GGGTCACCACCTCCGCCGTCCCGATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCACCACCGGAGTCCCCGAGCTC
GACCGCGTCCTCGGCGGCGGCCTGGTCCCCGGCGCCGTCGTCCTCCTCGCCGGCGAACCGGGCGTGGGCAAGTCCACCCT
CCTCCTCGACGTCGCCGCCAAGGCCGCCGACGCCGAACACCCGACCCTCTATGTCACGGGCGAGGAGTCCGCCAGCCAGG
TCCGCCTGAGGGCCGACCGCATCAACGCCCTCCACGACCACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCCGTACTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTCCTGATCCTGGACTCGGTCCAGACGATCGCCTCTCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTCATCCGCGCGTCCAAGGACCGCGGTATGTCGACACTCC
TTGTGGGACACGTCACAAAGGACGGCGCCATCGCGGGCCCCCGCCTCCTGGAACACCTCGTCGACGTGGTCCTGAGCTTC
GAGGGTGACCGCCACGCCCGCCTCCGTCTGGTCCGCGGCATCAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGCCTCACCGACCCCAGCGGCCTCTTCCTCACCCGCCGCGACGAACCCGTTCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCGGAAGTGCAGTCGCTCACAGTCGACTCGCAGCTG
CCCTCCCCCCGCCGAACGACGTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGGCCG
TATCAGCGCCCTCGGCAAGCGGGACATCTACTCGGCGACGGTCGGCGGTGTGAAGCTCTCGGAGCCCGCGGCGGACCTGG
CGATCGCGCTCGCCCTGGCGTCGGCGGCGACCGACACCCCCCTGCCCAAGAACCTCGTGGCGATCGGTGAAGTGGGCCTC
GCGGGCGAGGTCAGGAGGGTCACCGGGGTCCAGCGCCGCCTCTCCGAAGCGCACCGTCTCGGCTTCACTCACGCGCTCGT
TCCGTCCGACCCCGGCAAGGTTCCTCCCGGTATGAAGGTCCTGGAAGTGGCCGACATGGGAGACGCGCTCCGGGTACTGC
CCCGATCCCGTAGGCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

96.588

0.412
  radA Streptococcus mitis NCTC 12261

42.444

95.949

0.407
  radA Streptococcus mitis SK321

42.444

95.949

0.407
  radA Streptococcus pneumoniae TIGR4

42

95.949

0.403
  radA Streptococcus pneumoniae Rx1

42

95.949

0.403
  radA Streptococcus pneumoniae D39

42

95.949

0.403
  radA Streptococcus pneumoniae R6

42

95.949

0.403