Detailed information NTG0660068

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AVAEIV_RS06350
• Genome accession: NZ_CP092752
• Coordinates: 1293216..1294085 (-)
• Length: 289 a.a.
• NCBI ID: WP_302228461.1
• Uniprot ID: -
• Organism: Azotobacter vinelandii strain AEIV
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1288216..1299085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVAEIV_RS06315 (AVAEIV_001258)	-	1288730..1290028 (-)	1299	WP_012699846.1	NAD(P)/FAD-dependent oxidoreductase	-
AVAEIV_RS06320 (AVAEIV_001259)	-	1290093..1290266 (-)	174	WP_012699847.1	DUF3094 domain-containing protein	-
AVAEIV_RS06325 (AVAEIV_001260)	-	1290571..1290996 (+)	426	WP_012699848.1	GNAT family N-acetyltransferase	-
AVAEIV_RS06330 (AVAEIV_001261)	-	1290993..1291460 (+)	468	WP_012699849.1	hypothetical protein	-
AVAEIV_RS06335 (AVAEIV_001262)	-	1291457..1292143 (+)	687	WP_012699850.1	energy-coupling factor ABC transporter permease	-
AVAEIV_RS06340 (AVAEIV_001263)	yacG	1292249..1292449 (-)	201	WP_041806982.1	DNA gyrase inhibitor YacG	-
AVAEIV_RS06345 (AVAEIV_001264)	coaE	1292446..1293054 (-)	609	WP_302228460.1	dephospho-CoA kinase	-
AVAEIV_RS06350 (AVAEIV_001265)	pilD	1293216..1294085 (-)	870	WP_302228461.1	prepilin peptidase	Machinery gene
AVAEIV_RS06355 (AVAEIV_001266)	pilC	1294088..1295305 (-)	1218	WP_012699853.1	type II secretion system F family protein	Machinery gene
AVAEIV_RS06360 (AVAEIV_001267)	pilB	1295530..1297230 (-)	1701	WP_012699854.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AVAEIV_RS06365 (AVAEIV_001268)	-	1297759..1298256 (+)	498	WP_302228462.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31620.62 Da
• Isoelectric Point: 6.9531

>NTDB_id=660068 AVAEIV_RS06350 WP_302228461.1 1293216..1294085(-) (pilD) [Azotobacter vinelandii strain AEIV]
MSIVDLLAGPGLAFAVFAGLLGLLVGSFLNVVVHRLPKMMLHDWQAQAREVLELPNEPPGEPFNLLLPHSHCPHCGHAIR
PWENIPLLSWLLLGGRCSACKARIGARYPLVELTCGLLSAHVAWHYGFGWQAGAMLLLGWALLAMSLIDYDHQLLPDSLV
LPLLWLGLILNSFGLFVSLEDALWGAVTGYLSLWSVYWLFKLFTGKEGMGYGDFKLLAMLGAWGGWQILPLTVLLSSLVG
AMLGIVILRLRKAESGTPIPFGPFLAFAGWIALLWGEQITAGYLRFAGL

Nucleotide

• Length: 870 bp

>NTDB_id=660068 AVAEIV_RS06350 WP_302228461.1 1293216..1294085(-) (pilD) [Azotobacter vinelandii strain AEIV]
ATGTCCATCGTCGATCTTCTGGCCGGCCCCGGACTGGCCTTCGCCGTTTTCGCGGGGCTGCTGGGCCTGCTGGTCGGCAG
CTTTCTCAACGTGGTCGTCCACCGCCTGCCGAAGATGATGCTGCACGACTGGCAGGCACAGGCGCGGGAAGTGCTGGAAC
TGCCCAACGAGCCTCCCGGCGAGCCTTTCAATCTGCTGCTGCCCCACTCCCATTGCCCACATTGCGGGCACGCGATCAGG
CCCTGGGAGAACATCCCCCTGCTCAGCTGGCTGCTCCTGGGTGGCCGCTGCTCGGCCTGCAAGGCCCGGATCGGCGCGCG
CTACCCCCTGGTGGAGCTGACCTGCGGGCTGCTTTCGGCCCATGTCGCCTGGCATTACGGCTTCGGCTGGCAAGCCGGCG
CCATGTTGTTGCTCGGCTGGGCTCTGCTGGCCATGAGCCTGATCGATTACGATCATCAACTGCTGCCGGATTCGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCCTCAACAGCTTCGGTCTGTTCGTTTCCTTGGAGGACGCCCTCTGGGGCGCGGT
GACCGGCTACCTCAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGTTCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCGTACTGCTCTCCTCGCTGGTCGGC
GCCATGCTGGGGATCGTCATCCTGCGCCTGCGCAAGGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTTTCTCGCCTT
CGCCGGCTGGATCGCCCTGCTCTGGGGCGAGCAGATCACCGCCGGCTACCTGCGCTTCGCCGGTCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.777	94.464	0.536
pilD	Vibrio campbellii strain DS40M4	53.48	94.464	0.505
pilD	Acinetobacter nosocomialis M2	50	94.81	0.474
pilD	Acinetobacter baumannii D1279779	50	94.81	0.474
pilD	Neisseria gonorrhoeae MS11	48.507	92.734	0.45