Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   MKF36_RS17455 Genome accession   NZ_CP092750
Coordinates   3541998..3542117 (+) Length   39 a.a.
NCBI ID   WP_041482476.1    Uniprot ID   -
Organism   Bacillus velezensis strain KS04AU     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3536998..3547117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKF36_RS17435 (MKF36_17435) - 3537348..3537860 (+) 513 Protein_3456 bacteriocin biosynthesis protein AlbG -
  MKF36_RS17440 (MKF36_17440) - 3537867..3539243 (-) 1377 WP_042635568.1 YncE family protein -
  MKF36_RS17445 (MKF36_17445) - 3539283..3540638 (-) 1356 WP_042635569.1 YncE family protein -
  MKF36_RS17450 (MKF36_17450) rapF 3540869..3542014 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  MKF36_RS17455 (MKF36_17455) phrF 3541998..3542117 (+) 120 WP_041482476.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  MKF36_RS17460 (MKF36_17460) - 3542315..3542518 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  MKF36_RS17465 (MKF36_17465) - 3542532..3542735 (+) 204 WP_007407641.1 hypothetical protein -
  MKF36_RS17470 (MKF36_17470) - 3542770..3542955 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  MKF36_RS17475 (MKF36_17475) - 3543141..3543422 (+) 282 WP_007407643.1 hypothetical protein -
  MKF36_RS17480 (MKF36_17480) - 3543466..3543978 (+) 513 WP_042635570.1 stage II sporulation protein M -
  MKF36_RS17485 (MKF36_17485) - 3544569..3544787 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  MKF36_RS17490 (MKF36_17490) speB 3544955..3545827 (-) 873 WP_007614448.1 agmatinase -
  MKF36_RS17495 (MKF36_17495) speE 3545886..3546716 (-) 831 WP_042635571.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4267.13 Da        Isoelectric Point: 10.0233

>NTDB_id=660058 MKF36_RS17455 WP_041482476.1 3541998..3542117(+) (phrF) [Bacillus velezensis strain KS04AU]
MKLKYKLALTCLAVSTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=660058 MKF36_RS17455 WP_041482476.1 3541998..3542117(+) (phrF) [Bacillus velezensis strain KS04AU]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAGTAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462