Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG243_RS16450 Genome accession   NZ_CP108392
Coordinates   3628774..3629424 (+) Length   216 a.a.
NCBI ID   WP_327239779.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01318     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3623774..3634424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG243_RS16425 (OG243_16455) - 3624566..3624889 (-) 324 WP_030916001.1 STAS domain-containing protein -
  OG243_RS16430 (OG243_16460) - 3625116..3625964 (-) 849 WP_326627215.1 3-hydroxyacyl-CoA dehydrogenase family protein -
  OG243_RS16435 (OG243_16465) - 3626266..3626838 (+) 573 WP_326605800.1 cob(I)yrinic acid a,c-diamide adenosyltransferase -
  OG243_RS16440 (OG243_16470) - 3626869..3627429 (-) 561 WP_326815018.1 hypothetical protein -
  OG243_RS16445 (OG243_16475) - 3627581..3628777 (+) 1197 WP_327239778.1 histidine kinase -
  OG243_RS16450 (OG243_16480) vraR 3628774..3629424 (+) 651 WP_327239779.1 response regulator transcription factor Regulator
  OG243_RS16455 (OG243_16485) - 3629593..3631464 (+) 1872 WP_327239780.1 glycoside hydrolase family 18 chitinase -
  OG243_RS16460 (OG243_16490) - 3631683..3632129 (-) 447 WP_326605795.1 DUF2550 domain-containing protein -
  OG243_RS16465 (OG243_16495) - 3632267..3632641 (-) 375 WP_030915989.1 F0F1 ATP synthase subunit epsilon -
  OG243_RS16470 (OG243_16500) atpD 3632752..3634194 (-) 1443 WP_326627225.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 22883.57 Da        Isoelectric Point: 4.6207

>NTDB_id=659995 OG243_RS16450 WP_327239779.1 3628774..3629424(+) (vraR) [Streptomyces sp. NBC_01318]
MTIRVLVAEDQSAVRAGLVLILGSAPDIEVVGEAADGEAAVRLARELRPDLVLMDVQMPRLDGVSATRQVVAEQLADVLV
LTTFDLDEYVFGALRAGAAGFLLKNTEAYELLEAVRTVARGEGLIAPAVTRRLIAEFAGTTPARPVNAPDPAVLDALTRR
EREVLGCLGVGLSNAEIAVRLSMAEATVKTHVSRLLGKLELLSRVQAAVLAQELGI

Nucleotide


Download         Length: 651 bp        

>NTDB_id=659995 OG243_RS16450 WP_327239779.1 3628774..3629424(+) (vraR) [Streptomyces sp. NBC_01318]
ATGACGATCCGGGTACTGGTCGCGGAGGACCAGTCGGCCGTGCGCGCGGGGCTGGTGCTCATTCTGGGCAGCGCGCCCGA
TATCGAGGTCGTCGGCGAGGCGGCGGACGGCGAGGCGGCGGTGCGTCTCGCCCGTGAACTGCGCCCGGATCTGGTGCTGA
TGGATGTCCAGATGCCCCGGCTGGACGGAGTGTCGGCGACGAGGCAGGTGGTGGCCGAGCAGTTGGCCGATGTGCTCGTG
CTGACGACGTTCGATCTGGACGAGTACGTCTTCGGGGCGCTGCGGGCGGGCGCGGCGGGCTTTCTGCTGAAGAACACCGA
GGCGTACGAACTGCTGGAAGCGGTGCGGACGGTGGCGCGCGGCGAGGGCCTGATCGCCCCTGCCGTGACCCGCCGTCTGA
TCGCCGAGTTCGCCGGAACGACGCCGGCGCGGCCTGTGAACGCACCCGATCCGGCGGTTCTCGATGCCCTGACGCGGCGC
GAGCGCGAGGTACTCGGGTGTCTGGGCGTTGGGCTGTCGAACGCCGAGATCGCGGTGCGTCTTTCGATGGCGGAGGCGAC
GGTGAAGACGCACGTCAGCAGGTTGCTGGGGAAGCTGGAGCTGCTCAGCAGGGTCCAGGCAGCCGTACTGGCACAGGAGT
TGGGGATCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.315

98.611

0.407
  degU Bacillus subtilis subsp. subtilis str. 168

39.367

100

0.403