Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   MK801_RS00650 Genome accession   NZ_CP092748
Coordinates   130322..130813 (+) Length   163 a.a.
NCBI ID   WP_015427182.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 125322..135813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS00635 (MK801_00635) rpsB 126204..126971 (+) 768 WP_011836067.1 30S ribosomal protein S2 -
  MK801_RS00640 (MK801_00640) tsf 127093..128121 (+) 1029 WP_015427183.1 translation elongation factor Ts -
  MK801_RS00645 (MK801_00645) ezrA 128326..130056 (+) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  MK801_RS00650 (MK801_00650) comX 130322..130813 (+) 492 WP_015427182.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19806.64 Da        Isoelectric Point: 5.3639

>NTDB_id=659945 MK801_RS00650 WP_015427182.1 130322..130813(+) (comX) [Lactococcus lactis strain 17M1]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPENEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=659945 MK801_RS00650 WP_015427182.1 130322..130813(+) (comX) [Lactococcus lactis strain 17M1]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACGAAATTTAAGGTAAAGTATCATCAAAGATTAATTGATGAGCTAAGACGGAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGAAAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATTTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

77.301

100

0.773