Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG395_RS30140 Genome accession   NZ_CP108390
Coordinates   6621811..6623223 (-) Length   470 a.a.
NCBI ID   WP_327245733.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01320     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6616811..6628223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG395_RS30120 (OG395_30095) - 6617679..6618581 (-) 903 WP_327245730.1 A/G-specific adenine glycosylase -
  OG395_RS30125 (OG395_30100) - 6618880..6619611 (-) 732 Protein_5974 phosphatase PAP2 family protein -
  OG395_RS30130 (OG395_30105) - 6619568..6620374 (+) 807 WP_327245731.1 hypothetical protein -
  OG395_RS30135 (OG395_30110) disA 6620606..6621730 (-) 1125 WP_327245732.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG395_RS30140 (OG395_30115) radA/sms 6621811..6623223 (-) 1413 WP_327245733.1 DNA repair protein RadA Machinery gene
  OG395_RS30145 (OG395_30120) - 6623392..6625290 (+) 1899 WP_327245734.1 hypothetical protein -
  OG395_RS30150 (OG395_30125) - 6625315..6626196 (-) 882 WP_327245735.1 hypothetical protein -
  OG395_RS30155 (OG395_30130) - 6626237..6627187 (+) 951 WP_327245736.1 Ppx/GppA phosphatase family protein -
  OG395_RS30160 (OG395_30135) - 6627314..6628141 (+) 828 WP_327245737.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49618.64 Da        Isoelectric Point: 8.0127

>NTDB_id=659926 OG395_RS30140 WP_327245733.1 6621811..6623223(-) (radA/sms) [Streptomyces sp. NBC_01320]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGVPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVDE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRLRADRIHAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRTEAPREDNARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=659926 OG395_RS30140 WP_327245733.1 6621811..6623223(-) (radA/sms) [Streptomyces sp. NBC_01320]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTATCGCTGCACCGAATGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGTTGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAATTCGGCGGCGTCCCTGCCGTACGGACCACGGCGGCCG
GCCGCGTGAGCACGGCCGCTCTCCCCATCGGCCAGGTCGACAGTCGGCAGGCCACCGCCCGGTCGACCGGTGTCGACGAA
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTGGGCAAGTCGAC
GCTCCTGCTGGACGTGGCGGCCAAGGCCGCCAGTGACGAGCACCGCACTCTCTATGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGTGCCGACCGGATCCACGCGATCAACGACCATCTCTACCTCGCGGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCATCCTCGACTCCGTACAGACCGTCGCCTCGCCCGAGATCGACGG
TGCGCCCGGCGGTATGGCGCAGGTCCGCGAGGTCGCCGGAGCGCTCATCCGCGCCTCGAAGGATCGCGGCATGTCCACGC
TGTTGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCGCGGCTGCTGGAACATCTCGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGTCATGCGCGCCTCCGGCTGGTCCGCGGCGTGAAGAACCGGTACGGAGCGACGGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGTCCGGGCTCTTCCTCACCCGGCGCGACGAACCCGTAC
CCGGCACCTGTCTTACAGTCACCCTGGAGGGACGGCGCCCGCTCGTCGCCGAAGTGCAGGCGTTGACGGTCGATTCGCAG
ATCCCGTCGCCCCGGCGCACCACCTCCGGGCTCGAGACGTCCCGGGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGCGG
CCGGATCAGCTCGCTCGGAAAACGGGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCCGACC
TCGCGGTCGCACTGGCGCTGGCCAGTGCGGCAAGCGACACACCACTGCCCAAGAACCTGGTGGCGATCGGCGAAGTGGGC
CTCGCGGGCGAGGTCAGACGGGTGACCGGGGTGCAGCGCAGACTGGCCGAGGCACACCGGCTGGGCTTCACCCACGCACT
GGTTCCGACCGACCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTGAGAGTAC
TCCCGCGCCGGTCTCGTACGGAGGCCCCACGGGAGGACAACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus pneumoniae D39

42.826

96.383

0.413
  radA Streptococcus pneumoniae R6

42.826

96.383

0.413
  radA Streptococcus pneumoniae Rx1

42.826

96.383

0.413
  radA Streptococcus pneumoniae TIGR4

42.826

96.383

0.413
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404