Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   MKW31_RS17790 Genome accession   NZ_CP092715
Coordinates   3643123..3644268 (+) Length   381 a.a.
NCBI ID   WP_327972459.1    Uniprot ID   -
Organism   Bacillus velezensis strain 37-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3638123..3649268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKW31_RS17770 (MKW31_17715) - 3639020..3639448 (-) 429 WP_251257220.1 DUF1934 domain-containing protein -
  MKW31_RS17775 (MKW31_17720) - 3639602..3640114 (+) 513 Protein_3440 bacteriocin biosynthesis protein AlbG -
  MKW31_RS17780 (MKW31_17725) - 3640121..3641497 (-) 1377 WP_349403722.1 YncE family protein -
  MKW31_RS17785 (MKW31_17730) - 3641537..3642892 (-) 1356 WP_053104069.1 YncE family protein -
  MKW31_RS17790 (MKW31_17735) rapF 3643123..3644268 (+) 1146 WP_327972459.1 tetratricopeptide repeat protein Regulator
  MKW31_RS17795 (MKW31_17740) phrF 3644252..3644371 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  MKW31_RS17800 (MKW31_17745) - 3644569..3644772 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  MKW31_RS17805 (MKW31_17750) - 3644786..3644989 (+) 204 WP_007407641.1 hypothetical protein -
  MKW31_RS17810 (MKW31_17755) - 3645024..3645209 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  MKW31_RS17815 (MKW31_17760) - 3645395..3645676 (+) 282 WP_007407643.1 hypothetical protein -
  MKW31_RS17820 (MKW31_17765) - 3645720..3646232 (+) 513 WP_039253458.1 stage II sporulation protein M -
  MKW31_RS17825 (MKW31_17770) - 3646823..3647041 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  MKW31_RS17830 (MKW31_17775) speB 3647209..3648081 (-) 873 WP_007614448.1 agmatinase -
  MKW31_RS17835 (MKW31_17780) speE 3648140..3648970 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45533.52 Da        Isoelectric Point: 4.6479

>NTDB_id=659875 MKW31_RS17790 WP_327972459.1 3643123..3644268(+) (rapF) [Bacillus velezensis strain 37-1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASTYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=659875 MKW31_RS17790 WP_327972459.1 3643123..3644268(+) (rapF) [Bacillus velezensis strain 37-1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCAGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTCACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCACATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.215

100

0.782
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564