Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MKW31_RS16870 Genome accession   NZ_CP092715
Coordinates   3457613..3458302 (-) Length   229 a.a.
NCBI ID   WP_349403719.1    Uniprot ID   -
Organism   Bacillus velezensis strain 37-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3452613..3463302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKW31_RS16835 (MKW31_16780) - 3452810..3453292 (-) 483 WP_003151394.1 flagellar protein FlgN -
  MKW31_RS16840 (MKW31_16785) flgM 3453307..3453573 (-) 267 WP_094032533.1 flagellar biosynthesis anti-sigma factor FlgM -
  MKW31_RS16845 (MKW31_16790) - 3453643..3454062 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  MKW31_RS16850 (MKW31_16795) comFC 3454136..3454825 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  MKW31_RS16855 (MKW31_16800) - 3454831..3455115 (-) 285 WP_007407481.1 competence protein ComFB -
  MKW31_RS16860 (MKW31_16805) comFA 3455173..3456558 (-) 1386 WP_094032535.1 DEAD/DEAH box helicase Machinery gene
  MKW31_RS16865 (MKW31_16810) - 3456667..3457515 (-) 849 WP_003151387.1 DegV family protein -
  MKW31_RS16870 (MKW31_16815) degU 3457613..3458302 (-) 690 WP_349403719.1 two-component system response regulator DegU Regulator
  MKW31_RS16875 (MKW31_16820) degS 3458379..3459542 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  MKW31_RS16880 (MKW31_16825) - 3459765..3460412 (+) 648 WP_061581228.1 YigZ family protein -
  MKW31_RS16885 (MKW31_16830) - 3460417..3461652 (+) 1236 WP_025285355.1 LCP family protein -
  MKW31_RS16890 (MKW31_16835) - 3461751..3462827 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25924.61 Da        Isoelectric Point: 5.7490

>NTDB_id=659870 MKW31_RS16870 WP_349403719.1 3457613..3458302(-) (degU) [Bacillus velezensis strain 37-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTDARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=659870 MKW31_RS16870 WP_349403719.1 3457613..3458302(-) (degU) [Bacillus velezensis strain 37-1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGATGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996