Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG772_RS18375 Genome accession   NZ_CP108388
Coordinates   3982259..3982858 (+) Length   199 a.a.
NCBI ID   WP_266747096.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01321     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3977259..3987858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG772_RS18350 (OG772_18370) - 3977414..3978787 (+) 1374 WP_266747099.1 aspartate aminotransferase family protein -
  OG772_RS18355 (OG772_18375) - 3978930..3979694 (+) 765 WP_266747098.1 GntR family transcriptional regulator -
  OG772_RS18360 (OG772_18380) - 3979972..3980622 (+) 651 WP_266752274.1 hypothetical protein -
  OG772_RS18365 (OG772_18385) - 3980724..3981509 (-) 786 WP_266747097.1 SLATT domain-containing protein -
  OG772_RS18370 (OG772_18390) - 3981866..3982201 (+) 336 WP_266752272.1 YbaB/EbfC family nucleoid-associated protein -
  OG772_RS18375 (OG772_18395) recR 3982259..3982858 (+) 600 WP_266747096.1 recombination mediator RecR Machinery gene
  OG772_RS18380 (OG772_18400) - 3983026..3983685 (+) 660 WP_266747095.1 DUF5063 domain-containing protein -
  OG772_RS18385 (OG772_18405) - 3983797..3984021 (-) 225 WP_266747094.1 hypothetical protein -
  OG772_RS18390 (OG772_18410) - 3984114..3984388 (+) 275 Protein_3631 substrate-binding domain-containing protein -
  OG772_RS18395 (OG772_18415) - 3984779..3986050 (+) 1272 WP_266747093.1 aspartate kinase -
  OG772_RS18400 (OG772_18420) - 3986047..3987111 (+) 1065 WP_266747092.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21902.17 Da        Isoelectric Point: 5.1558

>NTDB_id=659828 OG772_RS18375 WP_266747096.1 3982259..3982858(+) (recR) [Streptomyces sp. NBC_01321]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQQEQCNICRDARRDQTV
ICVVEEPKDVVAVERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=659828 OG772_RS18375 WP_266747096.1 3982259..3982858(+) (recR) [Streptomyces sp. NBC_01321]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCTTTCCACATCCTGCAGGCCGAGCCGACCGATGTGCGCCGTCTCGCCCATGCCCTCCTCGAGGTCAAGGACAAGGTCC
GGTTCTGTTCGGTCTGCGGCAACGTCGCCCAGCAGGAACAGTGCAATATCTGCCGGGACGCGCGCCGCGACCAGACGGTC
ATCTGTGTGGTCGAGGAACCGAAGGATGTCGTCGCGGTCGAGCGGACCCGTGAGTTCCGGGGCCGATACCACGTGCTCGG
CGGCGCGATCAGTCCGATCGAGGGCGTCGGGCCCGACGACCTGCGCATCCGTGAACTGCTCGCCCGTCTCGCCGACGGGT
CGATCACGGAACTGATCCTGGCCACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCACGGATGATCAAG
CCGATGGGCCTGCGGGTCACCAGACTGGCCAGTGGTCTGCCGGTCGGCGGCGATCTGGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462