Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   AVFI_RS11445 Genome accession   NZ_CP092712
Coordinates   2498419..2499024 (+) Length   201 a.a.
NCBI ID   WP_011262617.1    Uniprot ID   Q5E2S4
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2499943..2500257 2498419..2499024 flank 919


Gene organization within MGE regions


Location: 2498419..2500257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS11445 (AVFI_11445) hapR 2498419..2499024 (+) 606 WP_011262617.1 TetR/AcrR family transcriptional regulator Regulator

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23245.24 Da        Isoelectric Point: 4.8215

>NTDB_id=659789 AVFI_RS11445 WP_011262617.1 2498419..2499024(+) (hapR) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MDTIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNKVENEFHQFIN
NSISLDLDVRSNLNTLLLNIIDSVQTGNKWIKVWFEWSTSTRDEVWPLFLSTHSNTNQVIKTMFEEGIERNEVCNDHTPE
NLTKMLHGICYSVFIQANRNSSSEEMEETANCFLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=659789 AVFI_RS11445 WP_011262617.1 2498419..2499024(+) (hapR) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGGATACAATCCAAAAAAGGCCTAGAACAAGGCTATCTCCAGAAAAGCGCAAAGAACAATTACTTGATATCGCAATTGA
AGTATTTTCACAACGTGGCATCGGTCGCGGTGGTCATGCTGATATTGCAGAAATCGCTCAGGTCTCTGTCGCTACCGTGT
TTAATTACTTCCCAACAAGAGAAGATCTTGTTGATGATGTATTAAATAAAGTTGAAAACGAATTTCACCAATTCATCAAT
AATTCAATTTCTCTTGATCTTGATGTTCGTTCTAACCTTAATACTCTTCTTCTGAATATCATTGACAGTGTTCAAACTGG
TAATAAGTGGATCAAAGTATGGTTTGAATGGAGTACCTCTACTCGTGATGAAGTATGGCCTCTTTTCTTAAGTACTCACT
CAAATACAAATCAAGTTATCAAAACTATGTTTGAAGAAGGTATTGAACGTAACGAAGTATGTAACGATCATACCCCTGAA
AACCTAACAAAAATGCTTCATGGTATTTGTTACTCTGTTTTCATTCAGGCTAACCGTAATAGTTCATCTGAAGAAATGGA
AGAAACAGCAAATTGCTTCTTGAATATGTTGTGTATTTATAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E2S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

59.799

99.005

0.592
  hapR Vibrio cholerae strain A1552

59.799

99.005

0.592
  opaR Vibrio parahaemolyticus RIMD 2210633

59.5

99.502

0.592