Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG384_RS16220 Genome accession   NZ_CP108385
Coordinates   3551463..3552875 (+) Length   470 a.a.
NCBI ID   WP_073733698.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01324     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3546463..3557875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG384_RS16200 (OG384_16200) - 3546514..3547329 (-) 816 WP_199884327.1 sugar phosphate isomerase/epimerase -
  OG384_RS16205 (OG384_16205) - 3547436..3548386 (-) 951 WP_073733701.1 Ppx/GppA phosphatase family protein -
  OG384_RS16210 (OG384_16210) - 3548428..3549267 (+) 840 WP_327337595.1 hypothetical protein -
  OG384_RS16215 (OG384_16215) - 3549344..3551218 (-) 1875 WP_327337596.1 hypothetical protein -
  OG384_RS16220 (OG384_16220) radA/sms 3551463..3552875 (+) 1413 WP_073733698.1 DNA repair protein RadA Machinery gene
  OG384_RS16225 (OG384_16225) disA 3553000..3554124 (+) 1125 WP_327337597.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG384_RS16230 (OG384_16230) - 3554198..3555046 (-) 849 WP_327337598.1 hypothetical protein -
  OG384_RS16235 (OG384_16235) - 3555331..3556233 (+) 903 WP_073733696.1 A/G-specific adenine glycosylase -
  OG384_RS16240 (OG384_16240) - 3556459..3557097 (+) 639 WP_327340623.1 SigE family RNA polymerase sigma factor -
  OG384_RS16245 (OG384_16245) - 3557085..3557828 (+) 744 WP_327337599.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49525.66 Da        Isoelectric Point: 8.4954

>NTDB_id=659746 OG384_RS16220 WP_073733698.1 3551463..3552875(+) (radA/sms) [Streptomyces sp. NBC_01324]
MATRTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRTQAPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=659746 OG384_RS16220 WP_073733698.1 3551463..3552875(+) (radA/sms) [Streptomyces sp. NBC_01324]
ATGGCCACCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACGGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTACGGACCACGGCGGCCG
GCCGCGTCTCCACCGCGGCGCTCCCGATCGGCCAGGTGGACAGCAGGCAGGCCACCGCCCGCTCGACCGGCGTCGGTGAG
CTCGACCGGGTGCTGGGCGGCGGTCTGGTGCCCGGTGCCGTGGTGCTGCTGGCGGGCGAGCCGGGCGTGGGCAAGTCCAC
CCTGCTGCTGGACGTGGCGGCCAAGGCCGCGAGCGACGAGCACCGCACGCTCTACGTCACCGCGGAGGAGTCCGCCAGCC
AGGTCCGGATGCGGGCCGACCGGATCCGGGCGATCAACGACCATCTGTACCTGGCCGCGGAGACCGATCTGTCGGCGGTC
CTCGGCCACCTGGACGCGGTCAAGCCGTCCCTGCTGGTCCTGGACTCCGTGCAGACCGTGGCCTCGCCCGAGATCGAGGG
CGCGCCCGGCGGGATGGCGCAGGTCCGCGAGGTCGCCGGGGCTCTCATCCGGGCCTCCAAGGAGCGCGGCATGGCCACCC
TCCTGGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTGTCC
TTCGAGGGCGACCGCCATGCCCGGCTCCGGCTCGTACGCGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTCCACGACGAGGGCATCACCGGCCTCGCGGATCCGTCCGGCCTCTTCCTCACCCGGCGCGACGAACCCGTGC
CCGGCACCTGCCTGACCGTCACCCTCGAAGGCAAGCGCCCCCTGGTCGCGGAGGTGCAGGCGCTCACGGTCGACTCGCAG
ATCCCTTCGCCCCGGCGCACCACCTCGGGTCTTGAGACGTCCAGGGTGTCGATGATGCTGGCGGTACTGGAGCAGCGCGG
CCGGATCAGCTCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCACGGAGCCCGCCGCGGACC
TCGCGATCGCACTGGCCCTGGCCAGTGCGGCGAGTGACACACCGCTGCCCAAGAATCTTGTGGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGACGGGTCACGGGGGTCCAGCGCAGACTGGCAGAGGCGCACCGTCTGGGCTTCACACACGCGCT
GGTGCCGACCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTGAGAGTCC
TCCCGCGCCGGTCTCGTACCCAGGCCCCGCAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

42.384

96.383

0.409
  radA Streptococcus pneumoniae D39

42.384

96.383

0.409
  radA Streptococcus pneumoniae R6

42.384

96.383

0.409
  radA Streptococcus pneumoniae TIGR4

42.384

96.383

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4