Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   MKR81_RS20355 Genome accession   NZ_CP092683
Coordinates   913462..915507 (-) Length   681 a.a.
NCBI ID   WP_045369090.1    Uniprot ID   A0AAQ2Y384
Organism   Vibrio campbellii strain IFL1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 908462..920507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS20340 (MKR81_20340) - 909513..910499 (+) 987 WP_240306561.1 peptidoglycan DD-metalloendopeptidase family protein -
  MKR81_RS20345 (MKR81_20345) ylqF 910820..911764 (+) 945 WP_005426767.1 ribosome biogenesis GTPase YlqF -
  MKR81_RS20350 (MKR81_20350) cqsA 912174..913355 (+) 1182 WP_079401271.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  MKR81_RS20355 (MKR81_20355) cqsS 913462..915507 (-) 2046 WP_045369090.1 hybrid sensor histidine kinase/response regulator Regulator
  MKR81_RS20360 (MKR81_20360) - 915811..916428 (+) 618 WP_240306562.1 HAD family phosphatase -
  MKR81_RS20365 (MKR81_20365) - 916493..917041 (-) 549 WP_005426812.1 GNAT family N-acetyltransferase -
  MKR81_RS20370 (MKR81_20370) - 917335..918459 (+) 1125 WP_045369066.1 fatty acid desaturase -
  MKR81_RS20375 (MKR81_20375) dcuC 918842..920209 (+) 1368 WP_012129600.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77825.66 Da        Isoelectric Point: 5.5065

>NTDB_id=659693 MKR81_RS20355 WP_045369090.1 913462..915507(-) (cqsS) [Vibrio campbellii strain IFL1]
MDAIRKVYQYAEPNLTLVGWMGFVGFPIYYIVWEFMFPQPYENLPLRILCSVLFFGIIYRNRTPFEWRRFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFAQTFAGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKEGKKEQYTLSDEDVTLLREVSSDAMK
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEFANQIVVTDNGSGIAPEVLQSIFQDFYTTGKSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSSAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMGFELTVLDVPAVLKKKEYEFEFDLILIDME
SLDARGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVSFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDST
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=659693 MKR81_RS20355 WP_045369090.1 913462..915507(-) (cqsS) [Vibrio campbellii strain IFL1]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTACCCTCGTAGGATGGATGGGCTTCGTAGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCTTACGAAAACCTACCGCTTCGTATTCTCTGCTCAGTCTTAT
TCTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTAGGTTCTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTGCCTTGCTTCTTCTTTTACATGTTGCTGATGAACAACTGGTCGAATGTATGGGTGATGTCGTTTATGTCGGC
GATTTTTCTGCACATTCTGCTCGTGCATATCACATCGGTGATGTTTGCCCAGACATTTGCGGGAATTGGTCTGGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCACCTTGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTCTTTGGTAACTTGTTCTATTTCCGAAACCAGGTAGAGCATGAAGCAAAAGTTTCAATCGCAAAGTCTTTTGGGGCAGG
TATCGCCCACGAAATGCGAAACCCACTTAGTGGTTTATTAACTTCTATCGATGTCATTCAATCCGTGTTGCCAAATCCGA
AAGAGGGCAAGAAAGAGCAGTACACGTTAAGTGATGAAGACGTGACACTGTTACGAGAAGTCAGCAGTGACGCAATGAAG
ATCATCCATTCAGGAAACGAAACCATTGATTTGCTTCTTACCTCAATTGATGAGAACCGTGTTTCTCGCTCGACATTTAA
AAAGCACTCTGCACAATCTGTTGTTGAGAGTGCGATTGAAAGTTTCAGTTACAAACGATCGACAGACCGTTTTGCTATCT
CCTTGGATGTAAGAAGTGAGTTCGATTTCTTGGGCAGCGATACATTGCTTAAGTATGTGATGTACAACTTGTTCAAGAAC
GCCTTCCACCACCGTAGTTCAGAAGACTTCCACATACACGTCACCATGTACAGTGATGAATTTGCCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCACCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAAGTCAGGAA
ACTATGGCCTTGGATTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGTGGTGATATTCGTTGCCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGCGCAGTCAAAGAGATTAAGAGTGAGCTAACTAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGGGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTTAAAAAGAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGATATGGAG
AGTTTAGACGCCCGTGGCAGCCATATAGATAAGGTTGAATCGTTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATTCAAAGAGCGAGAAGCGTTTCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTTTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAGCCGCTCGATTCAACA
AACAAGCGAACCATTATGGTGGTTGACGACAATGAGTCTCTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACCGAAGATGGGCTGCAGGCTATCAACGCGTTGAATGAGAACAATGTTGACTTAATACTGATGGACA
TCGAAATGCCAGTGATGGATGGCGTAGAGGCATCTCGTCAAATTAGAGGTTCAAATAAGGCCTACGCTTCGGTACCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTGGACAAGATTGGTTCATCTGGCATGTCGGATTTCATTGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.175

100

0.485