Detailed information NTG0659692

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: OG599_RS18035
• Genome accession: NZ_CP108370
• Coordinates: 4197936..4200560 (+)
• Length: 874 a.a.
• NCBI ID: WP_327176995.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01335
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4192936..4205560

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG599_RS18005 (OG599_18025)	dnaJ	4193524..4194714 (+)	1191	WP_327176990.1	molecular chaperone DnaJ	-
OG599_RS18010 (OG599_18030)	-	4194716..4195162 (+)	447	WP_327176991.1	helix-turn-helix domain-containing protein	-
OG599_RS18015 (OG599_18035)	-	4195287..4196270 (-)	984	WP_327176992.1	helix-turn-helix transcriptional regulator	-
OG599_RS18020 (OG599_18040)	-	4196411..4196884 (+)	474	WP_327176993.1	hypothetical protein	-
OG599_RS18025 (OG599_18045)	-	4196881..4197201 (+)	321	WP_275492963.1	(2Fe-2S)-binding protein	-
OG599_RS18030 (OG599_18050)	-	4197359..4197763 (-)	405	WP_327176994.1	TIGR03618 family F420-dependent PPOX class oxidoreductase	-
OG599_RS18035 (OG599_18055)	clpC	4197936..4200560 (+)	2625	WP_327176995.1	ATP-dependent chaperone ClpB	Regulator
OG599_RS18040 (OG599_18060)	-	4200737..4201294 (+)	558	WP_327176996.1	YbjN domain-containing protein	-
OG599_RS18045 (OG599_18065)	-	4201413..4202579 (-)	1167	WP_327176997.1	pyridoxal phosphate-dependent aminotransferase	-
OG599_RS18050 (OG599_18070)	-	4203458..4203970 (+)	513	Protein_3539	DUF2617 family protein	-

Sequence

Protein

• Length: 874 a.a.
• Molecular weight: 95123.75 Da
• Isoelectric Point: 4.7737

>NTDB_id=659692 OG599_RS18035 WP_327176995.1 4197936..4200560(+) (clpC) [Streptomyces sp. NBC_01335]
MDAELTNKSRDALTAATSRAVKDGHPDLTPAHLLLALLAGEDNENIIDLLAAVEADQATVRTETERLLGALPSVTGSTVA
PPQPNRELLAVVEDAARRAKDLGDEYVSTEHLLIAVAEKGGRTGEILGAQGAGAKKLLAAFEKSRGGRRVTTPDPEGQYK
ALEKFGTDFTAAAREGKLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLRDKRLVS
LDLGAMVAGAKYRGEFEERLKTVLSEIKESDGRIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTLDE
YRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVSIADAALVAAATLSDRYITSRFLPDKAIDLVDEAA
SRLRMEIDSSPVEIDELQRAVDRLHMEELALKSETDPASRQRLEKLRRDLADKEEELRGLTARWEKEKQGLNRVGELKER
LDDLRGQAERAQRDGDFDTASKLLYGEIPGLERELEEATEAEQVAAETPKETLVKDEVGSDDIADVVGAWTGIPAGRLLE
GETQKLLRMEEELGRRLIGQSEAVRAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRVD
MSEYSEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTI
LILTSNLGSQFLVDPLLKPEAKKDRVLEVVRASFKPEFLNRLDDLVVFSALTGDELAHIAGLQIGRLAKRLADRRLTLDV
TPAALAWLAEKGNDPAYGARPLRRLIQTAIGDQLAREILAGEIADGDTVRVDVFGDGAENGGAGEGGLIVGAVR

Nucleotide

• Length: 2625 bp

>NTDB_id=659692 OG599_RS18035 WP_327176995.1 4197936..4200560(+) (clpC) [Streptomyces sp. NBC_01335]
GTGGACGCCGAGCTGACGAACAAGAGCAGGGACGCCCTCACCGCGGCCACCAGCAGGGCCGTGAAGGACGGACACCCCGA
TCTCACCCCCGCACACCTGCTGCTCGCGCTGCTCGCGGGCGAGGACAACGAGAACATCATCGATCTGCTGGCCGCCGTGG
AGGCCGACCAGGCCACCGTGCGCACGGAGACCGAGCGGCTGCTCGGCGCGCTGCCCAGCGTCACCGGTTCCACCGTGGCA
CCGCCGCAGCCCAACCGCGAGCTGCTCGCCGTCGTCGAGGACGCCGCGCGCCGCGCCAAGGACCTCGGCGACGAGTACGT
CTCCACCGAGCACCTGCTGATCGCGGTCGCCGAGAAGGGCGGCCGGACCGGTGAGATCCTCGGGGCTCAGGGGGCCGGTG
CGAAGAAGCTGCTGGCCGCGTTCGAGAAGAGCAGGGGAGGGCGACGGGTGACCACACCCGACCCGGAGGGTCAGTACAAG
GCCCTGGAGAAGTTCGGCACGGACTTCACGGCCGCGGCCCGTGAGGGCAAGCTCGACCCGGTCATCGGCCGGGACCAGGA
GATCCGCCGCGTCGTACAGGTGCTGTCGCGCCGTACGAAGAACAACCCGGTCCTCATCGGTGAACCCGGCGTCGGCAAGA
CCGCCGTCGTCGAAGGGCTCGCCCAGCGCATCGTCAAGGGCGACGTGCCCGAGTCGCTGCGCGACAAGCGGCTGGTCTCC
CTCGACCTGGGGGCGATGGTCGCGGGCGCGAAGTACCGGGGCGAGTTCGAGGAGCGGCTGAAGACCGTCCTCTCCGAGAT
CAAGGAGAGCGACGGCCGGATCATCACCTTCATCGACGAGCTGCACACCGTCGTCGGCGCCGGAGCCGGCGGCGACTCCG
CCATGGACGCGGGCAACATGCTCAAGCCCATGCTGGCCCGCGGCGAGCTGCGCATGGTCGGCGCGACCACGCTCGACGAG
TACCGCGAGCGGATCGAGAAGGACCCCGCCCTGGAACGCCGCTTCCAGCAGGTGCTGGTCGCCGAGCCCAGCGTCGAGGA
CACCATCGCGATCCTGCGCGGGCTCAAGGGGCGCTACGAGGCGCACCACAAGGTCTCCATCGCGGACGCCGCGCTGGTGG
CCGCCGCGACCCTGTCCGACCGCTACATCACCTCCCGTTTCCTCCCGGACAAGGCGATCGACCTCGTGGACGAGGCCGCC
TCCCGGCTGCGCATGGAGATCGACTCCTCGCCCGTCGAGATCGACGAGCTGCAACGCGCCGTGGACCGGCTCCACATGGA
GGAGCTGGCGCTGAAGAGCGAGACCGACCCCGCCTCCCGGCAGCGGCTGGAGAAGCTCCGCCGCGACCTCGCCGACAAGG
AGGAGGAGCTGCGCGGCCTCACCGCCCGCTGGGAGAAGGAGAAGCAGGGCCTCAACCGGGTCGGTGAGCTGAAGGAACGC
CTCGACGACCTGCGCGGCCAGGCCGAACGCGCCCAGCGCGACGGCGACTTCGACACTGCCTCCAAGCTCCTCTACGGCGA
GATCCCCGGCCTGGAGCGCGAGCTGGAGGAAGCCACCGAGGCCGAGCAGGTGGCGGCCGAGACACCCAAGGAGACCCTGG
TCAAGGACGAGGTCGGCTCCGACGACATCGCCGACGTGGTCGGCGCCTGGACGGGCATCCCGGCCGGCCGGCTGCTGGAG
GGCGAGACGCAGAAGCTGCTGCGGATGGAGGAGGAGCTCGGCAGGCGCCTGATCGGCCAGAGCGAGGCCGTCCGCGCGGT
GTCGGACGCCGTACGCCGCACCCGGGCCGGGATCGCGGACCCGGACCGGCCCACCGGCTCGTTCCTCTTCCTCGGGCCCA
CCGGCGTCGGCAAGACGGAGCTCGCGAAGGCCCTGGCGGACTTCCTCTTCGACGACGAACGGGCCATGGTCCGCGTCGAC
ATGAGCGAGTACAGCGAGAAGCACAGCGTCGCCCGGCTCGTCGGCGCCCCGCCCGGCTACGTCGGTTACGAGGAGGGCGG
CCAGCTCACGGAGGCGGTCCGCCGCCGCCCGTACAGCGTCGTGCTGCTGGACGAGGTGGAGAAGGCGCACCCGGAGGTCT
TCGACATCCTGCTCCAGGTGCTCGACGACGGCCGGCTCACCGACGGCCAGGGCCGGACGGTGGACTTCCGCAACACCATC
CTGATCCTGACCTCCAACCTCGGCAGCCAGTTCCTGGTCGACCCGCTGCTCAAGCCCGAGGCGAAGAAGGACCGGGTACT
GGAGGTCGTACGGGCCTCGTTCAAGCCGGAGTTCCTGAACCGGCTGGACGACCTGGTCGTTTTCTCCGCGCTCACCGGCG
ACGAACTCGCCCACATCGCGGGGCTCCAGATCGGCCGCCTCGCCAAGCGGCTCGCCGACCGCCGGCTCACCCTCGACGTC
ACCCCGGCCGCGCTGGCCTGGCTCGCCGAGAAGGGCAACGACCCGGCCTACGGCGCCCGGCCGCTGCGCCGCCTCATCCA
GACGGCCATCGGCGACCAGCTCGCCAGGGAGATCCTCGCGGGCGAGATCGCGGACGGCGACACCGTACGGGTGGACGTCT
TCGGGGACGGCGCCGAGAACGGTGGGGCCGGCGAGGGCGGGCTCATCGTGGGCGCGGTGCGCTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-338)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (771-851)

• AAA domain (Cdc48 subfamily) (AAA_2) (603-764)

• AAA lid domain (AAA_lid_9) (344-446)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-146)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-69)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	46.72	99.428	0.465
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.822	97.941	0.41
clpC	Lactococcus lactis subsp. cremoris KW2	47.109	81.121	0.382