Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   MKR81_RS20350 Genome accession   NZ_CP092683
Coordinates   912174..913355 (+) Length   393 a.a.
NCBI ID   WP_079401271.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 907174..918355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS20340 (MKR81_20340) - 909513..910499 (+) 987 WP_240306561.1 peptidoglycan DD-metalloendopeptidase family protein -
  MKR81_RS20345 (MKR81_20345) ylqF 910820..911764 (+) 945 WP_005426767.1 ribosome biogenesis GTPase YlqF -
  MKR81_RS20350 (MKR81_20350) cqsA 912174..913355 (+) 1182 WP_079401271.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  MKR81_RS20355 (MKR81_20355) cqsS 913462..915507 (-) 2046 WP_045369090.1 hybrid sensor histidine kinase/response regulator Regulator
  MKR81_RS20360 (MKR81_20360) - 915811..916428 (+) 618 WP_240306562.1 HAD family phosphatase -
  MKR81_RS20365 (MKR81_20365) - 916493..917041 (-) 549 WP_005426812.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44057.07 Da        Isoelectric Point: 5.9816

>NTDB_id=659692 MKR81_RS20350 WP_079401271.1 912174..913355(+) (cqsA) [Vibrio campbellii strain IFL1]
MSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRLEKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=659692 MKR81_RS20350 WP_079401271.1 912174..913355(+) (cqsA) [Vibrio campbellii strain IFL1]
ATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGA
GCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGACCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACT
TGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCGTGATGCTATCTACGAGCACGATGATAACGTTGTCATGTCT
GCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTGAAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCT
ATTATCCCAATCCGGATGGGCAGCCAATATTGGCTTGTTACAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGACT
TCTTTGCACACATGTCTTTGTGGGAAGGTATTCGAGCGGCAGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAAC
CATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTATCGTTGTGGATTCGGTCTATAGCACGATAGGTACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGC
ATGGGCCAAACGGTTCTGGCTTGGTGAAAGCATTAGAACTCACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAA
ACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAAAGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCAT
CTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTTGAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGC
GAACCATGCTGTTCAATCGCGCTAAGGAGCTCAGAACAGGCCTAAAGCAGATTGGCTTTCATATCCGTAGTGAATCTCAA
ATTGTCGCTTTGGAGTGCGGTAGCGAGAGAAATACGGAACGAGTACGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGC
TGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATTATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACA
TTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCACCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

99.237

0.567