Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   MKR81_RS02895 Genome accession   NZ_CP092682
Coordinates   592528..593145 (-) Length   205 a.a.
NCBI ID   WP_240305025.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 587528..598145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS02885 (MKR81_02885) aceF 588582..590477 (+) 1896 WP_240305024.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  MKR81_RS02890 (MKR81_02890) lpdA 590721..592151 (+) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  MKR81_RS02895 (MKR81_02895) opaR 592528..593145 (-) 618 WP_240305025.1 transcriptional regulator OpaR Regulator
  MKR81_RS02900 (MKR81_02900) hpt 593467..593997 (+) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  MKR81_RS02905 (MKR81_02905) can 594084..594752 (-) 669 WP_005531727.1 carbonate dehydratase -
  MKR81_RS02910 (MKR81_02910) - 595036..596706 (+) 1671 WP_050910741.1 SulP family inorganic anion transporter -
  MKR81_RS02915 (MKR81_02915) - 596947..597864 (+) 918 WP_005531730.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23766.07 Da        Isoelectric Point: 6.4045

>NTDB_id=659667 MKR81_RS02895 WP_240305025.1 592528..593145(-) (opaR) [Vibrio campbellii strain IFL1]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRRFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=659667 MKR81_RS02895 WP_240305025.1 592528..593145(-) (opaR) [Vibrio campbellii strain IFL1]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCAGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCGTTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

95.588

99.512

0.951
  hapR Vibrio cholerae C6706

71.212

96.585

0.688
  hapR Vibrio cholerae strain A1552

71.212

96.585

0.688