Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG471_RS19600 Genome accession   NZ_CP108369
Coordinates   4584176..4584775 (-) Length   199 a.a.
NCBI ID   WP_148019920.1    Uniprot ID   A0ABY9IWC2
Organism   Streptomyces sp. NBC_01336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4579176..4589775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG471_RS19580 (OG471_19605) - 4580146..4581417 (-) 1272 WP_148019924.1 aspartate kinase -
  OG471_RS19585 (OG471_19610) - 4581808..4582635 (+) 828 WP_327171735.1 alpha/beta hydrolase -
  OG471_RS19590 (OG471_19615) - 4582777..4583355 (-) 579 WP_327171736.1 GNAT family protein -
  OG471_RS19595 (OG471_19620) - 4583415..4584074 (-) 660 WP_219570008.1 DUF5063 domain-containing protein -
  OG471_RS19600 (OG471_19625) recR 4584176..4584775 (-) 600 WP_148019920.1 recombination mediator RecR Machinery gene
  OG471_RS19605 (OG471_19630) - 4584896..4585231 (-) 336 WP_148022075.1 YbaB/EbfC family nucleoid-associated protein -
  OG471_RS19610 (OG471_19635) - 4585610..4586410 (+) 801 WP_306082456.1 SLATT domain-containing protein -
  OG471_RS19615 (OG471_19640) - 4586455..4587105 (-) 651 WP_219575492.1 hypothetical protein -
  OG471_RS19620 (OG471_19645) - 4587271..4588035 (-) 765 WP_306070668.1 GntR family transcriptional regulator -
  OG471_RS19625 (OG471_19650) - 4588102..4589463 (-) 1362 WP_219574364.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21858.16 Da        Isoelectric Point: 5.1721

>NTDB_id=659617 OG471_RS19600 WP_148019920.1 4584176..4584775(-) (recR) [Streptomyces sp. NBC_01336]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQQEECGICRDARRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=659617 OG471_RS19600 WP_148019920.1 4584176..4584775(-) (recR) [Streptomyces sp. NBC_01336]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCCACGGATGTGCGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GTTTCTGCGCCGTCTGCGGCAACGTGGCCCAGCAGGAGGAGTGCGGCATCTGCCGTGACGCGCGCCGCGACCGGACGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTCCTGGG
CGGGGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGCGAACTGCTGGCCCGGCTCGCCGACGGCT
CCATCACCGAACTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGGTCAAG
CCGATGGGTCTGCGCGTCACCCGGCTGGCCAGCGGCCTGCCGGTGGGCGGCGACCTGGAGTACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGGCGCCTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452