Detailed information NTG0659616

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MJ642_RS26725
• Genome accession: NZ_CP092656
• Coordinates: 4799685..4800485 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain NB5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4794685..4805485

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MJ642_RS26690	gspH	4794841..4795356 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
MJ642_RS26695	gspI	4795353..4795718 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
MJ642_RS26700	gspJ	4795715..4796311 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
MJ642_RS26705	gspK	4796308..4797294 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
MJ642_RS26710	gspL	4797281..4798474 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
MJ642_RS26715	-	4798467..4798952 (+)	486	WP_004151943.1	type II secretion system protein M	-
MJ642_RS26720	-	4798942..4799688 (+)	747	WP_004145897.1	type II secretion system protein N	-
MJ642_RS26725	pilD	4799685..4800485 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
MJ642_RS26730	hrpB	4800533..4802962 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
MJ642_RS26735	thpR	4803035..4803571 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
MJ642_RS26740	sfsA	4803571..4804287 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
MJ642_RS26745	dksA	4804450..4804905 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=659616 MJ642_RS26725 WP_002888947.1 4799685..4800485(+) (pilD) [Klebsiella pneumoniae strain NB5]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=659616 MJ642_RS26725 WP_002888947.1 4799685..4800485(+) (pilD) [Klebsiella pneumoniae strain NB5]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425