Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG471_RS18885 Genome accession   NZ_CP108369
Coordinates   4423016..4424428 (+) Length   470 a.a.
NCBI ID   WP_219572035.1    Uniprot ID   A0ABY9IVR4
Organism   Streptomyces sp. NBC_01336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4418016..4429428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG471_RS18865 (OG471_18890) - 4418017..4418841 (-) 825 WP_306070604.1 sugar phosphate isomerase/epimerase -
  OG471_RS18870 (OG471_18895) - 4418934..4419884 (-) 951 WP_327171687.1 Ppx/GppA phosphatase family protein -
  OG471_RS18875 (OG471_18900) - 4419969..4420808 (+) 840 WP_327171688.1 hypothetical protein -
  OG471_RS18880 (OG471_18905) - 4420879..4422831 (-) 1953 WP_327171689.1 hypothetical protein -
  OG471_RS18885 (OG471_18910) radA/sms 4423016..4424428 (+) 1413 WP_219572035.1 DNA repair protein RadA Machinery gene
  OG471_RS18890 (OG471_18915) disA 4424553..4425677 (+) 1125 WP_114245192.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG471_RS18895 (OG471_18920) - 4425874..4426698 (-) 825 WP_327171690.1 hypothetical protein -
  OG471_RS18900 (OG471_18925) - 4427037..4427939 (+) 903 WP_219575455.1 A/G-specific adenine glycosylase -
  OG471_RS18905 (OG471_18930) - 4428145..4428789 (+) 645 WP_219572036.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49422.53 Da        Isoelectric Point: 8.2515

>NTDB_id=659612 OG471_RS18885 WP_219572035.1 4423016..4424428(+) (radA/sms) [Streptomyces sp. NBC_01336]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRMRADRIGAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEDGVRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=659612 OG471_RS18885 WP_219572035.1 4423016..4424428(+) (radA/sms) [Streptomyces sp. NBC_01336]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACCACGGCGGCCG
GCCGCGTCTCCACCGCCGCGCTCCCCATCGGCCAGGTGGACAGCCGCCAGGCCACCGCCCGCTCGACGGGCGTGGGTGAG
CTGGACCGTGTGCTGGGCGGCGGTCTGGTGCCCGGTGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTGGGGAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCCGCGAGCGACGAGCACCGCACTTTGTACGTCACGGCGGAGGAGTCCGCCAGCC
AGGTCAGGATGCGTGCCGACCGGATCGGGGCGATCAACGACCATCTGTACCTGGCCGCCGAAACGGATCTGTCAGCGGTC
CTCGGTCATCTGGACGCGGTCAAACCGTCCCTGCTCGTCCTGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGAGGG
CGCGCCCGGCGGGATGGCGCAGGTCCGCGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGCATGTCGACCC
TGCTGGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAACACCTGGTCGACGTGGTGCTGTCG
TTCGAGGGCGACCGGCATGCCAGGCTCCGGCTCGTGCGCGGCGTCAAGAACCGTTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTCCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTCACCCGCCGCGACGAGCCCGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGTCCGCTGGTCGCCGAGGTGCAGGCCCTCACCGTCGACTCCCAG
ATCCCTTCGCCCCGGCGCACCACTTCGGGGCTCGAGACGTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCTCGCTGGGCAAACGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTCTCCGAACCGGCCGCGGACC
TCGCGATCGCGCTCGCCCTGGCCAGCGCGGCCAGCGACACACCCCTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGGCGGGTCACCGGGGTCCAGCGCAGACTGGCCGAGGCGTACCGTCTGGGCTTCACGCACGCCCT
GGTCCCGACCGATCCGGGGAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTGGCCAACATGGGCGATGCGCTCAGGGTGC
TCCCGCGCCGCTCTCGCGCACAGGCCCCACAGGAGGACGGCGTACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

96.383

0.426
  radA Streptococcus pneumoniae Rx1

42.384

96.383

0.409
  radA Streptococcus pneumoniae D39

42.384

96.383

0.409
  radA Streptococcus pneumoniae R6

42.384

96.383

0.409
  radA Streptococcus pneumoniae TIGR4

42.384

96.383

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4