Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   SMUNUM_RS01430 Genome accession   NZ_AP014571
Coordinates   274882..275784 (+) Length   300 a.a.
NCBI ID   WP_002263524.1    Uniprot ID   A0AAX1K0S8
Organism   Streptococcus mutans LP13     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 269882..280784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS01405 - 269964..270125 (+) 162 WP_162470319.1 hypothetical protein -
  SMUNUM_RS01410 (SMNUM_0240) - 270597..270806 (+) 210 WP_002263944.1 hypothetical protein -
  SMUNUM_RS01415 (SMNUM_0241) - 271045..271302 (+) 258 WP_025986744.1 hypothetical protein -
  SMUNUM_RS01420 (SMNUM_0242) - 271981..272157 (+) 177 WP_168747632.1 hypothetical protein -
  SMUNUM_RS01425 (SMNUM_0243) comA/nlmT 272586..274868 (+) 2283 WP_002271629.1 peptide cleavage/export ABC transporter Regulator
  SMUNUM_RS01430 (SMNUM_0244) comB/nlmE 274882..275784 (+) 903 WP_002263524.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  SMUNUM_RS01435 (SMNUM_0245) - 276157..277824 (+) 1668 WP_019805321.1 transcription antiterminator -
  SMUNUM_RS01440 (SMNUM_0246) ulaG 278404..279495 (+) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34116.49 Da        Isoelectric Point: 10.4213

>NTDB_id=65955 SMUNUM_RS01430 WP_002263524.1 274882..275784(+) (comB/nlmE) [Streptococcus mutans LP13]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHQKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=65955 SMUNUM_RS01430 WP_002263524.1 274882..275784(+) (comB/nlmE) [Streptococcus mutans LP13]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACACTATTAATTGTTCCTTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCAAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

100

100

1

Multiple sequence alignment