Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG585_RS25200 Genome accession   NZ_CP108365
Coordinates   5564092..5565501 (-) Length   469 a.a.
NCBI ID   WP_266437784.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01340     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5559092..5570501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG585_RS25175 (OG585_25195) - 5559328..5559945 (-) 618 WP_323138246.1 hypothetical protein -
  OG585_RS25180 (OG585_25200) - 5559966..5560505 (-) 540 WP_060898668.1 SigE family RNA polymerase sigma factor -
  OG585_RS25185 (OG585_25205) - 5560777..5561700 (-) 924 WP_323138159.1 A/G-specific adenine glycosylase -
  OG585_RS25190 (OG585_25210) - 5561970..5562782 (+) 813 WP_327137348.1 hypothetical protein -
  OG585_RS25195 (OG585_25215) disA 5562888..5564012 (-) 1125 WP_266584576.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG585_RS25200 (OG585_25220) radA/sms 5564092..5565501 (-) 1410 WP_266437784.1 DNA repair protein RadA Machinery gene
  OG585_RS25205 (OG585_25225) - 5565709..5567484 (+) 1776 WP_327138105.1 hypothetical protein -
  OG585_RS25210 (OG585_25230) - 5567536..5568396 (-) 861 WP_266649056.1 hypothetical protein -
  OG585_RS25215 (OG585_25235) - 5568468..5569400 (+) 933 WP_266627256.1 Ppx/GppA phosphatase family protein -
  OG585_RS25220 (OG585_25240) - 5569677..5570501 (+) 825 WP_266627258.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49750.98 Da        Isoelectric Point: 8.4921

>NTDB_id=659543 OG585_RS25200 WP_266437784.1 5564092..5565501(-) (radA/sms) [Streptomyces sp. NBC_01340]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLIAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIHDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPAGMKVLEVADMGDALRVLPRSRRREAPRDEEQRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=659543 OG585_RS25200 WP_266437784.1 5564092..5565501(-) (radA/sms) [Streptomyces sp. NBC_01340]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGACACCGGGCC
GTGTCACCACCTCCGCGGTGCCGATCGGGCAGGTCGACGGCCGTCAGGCCACGGCCCGCTCCACCGGTGTACCCGAGCTG
GACCGCGTTCTGGGCGGCGGTCTCGTGCCCGGCGCGGTCGTCCTGATCGCCGGCGAGCCCGGTGTGGGCAAGTCCACGCT
CCTCCTGGACGTGGCGGCGAAGGCGGCGAGCGACGAGCACCGCACGCTGTACGTGACGGGTGAGGAGTCGGCCAGCCAGG
TCCGTCTGCGCGCCGACCGCATCAAGGCGATCCACGACCACCTGTACCTCGCGGCGGAGACCGACCTGGCCGCCGTGCTC
GGCCACTTGGACGCGGTGAAGCCTTCGCTCCTCATCCTGGACTCGGTCCAGACCGTCGCCTCCCCGGAGATCGACGGGGC
GCCCGGCGGTATGGCCCAGGTGCGGGAGGTCGCCGGGGCGCTCATCCGTGCCTCCAAGGAGCGCGGCATGTCCACGCTCC
TTGTGGGTCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTGCTCGAACACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGCCATGCGCGCCTGCGTCTGGTCCGAGGGGTCAAGAACCGGTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCGGACCCCTCCGGCCTCTTCCTCACCCGTCGCGCCGAGCCCGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCACTGGTGGCCGAGGTGCAGGCCCTCACCGTCGACTCCCAGATC
CCCTCCCCCCGTCGCACGACGTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCGGTCCTGGAGCAGCGGGGCCG
CATCAGCGCCCTCGGCAAGCGGGACATCTACTCGGCGACGGTGGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCCCTCGCGCTCGCGTCCGCGGCCAGTGACACCCCGCTCCCCAAGAACCTCGTGGCGATCGGCGAAGTGGGTCTC
GCGGGCGAGGTCAGACGGGTCACGGGGGTACAGCGGCGACTGGCCGAAGCTCACCGCCTGGGCTTCACGCACGCCCTCGT
TCCGAGCGATCCGGGCAAGATCCCTGCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGCGACGCCCTGCGAGTCCTCC
CGCGCTCCCGTCGCAGAGAGGCCCCACGGGACGAGGAACAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.588

0.42
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus mitis SK321

44.131

90.832

0.401
  radA Streptococcus mitis NCTC 12261

44.131

90.832

0.401