Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG585_RS24395 Genome accession   NZ_CP108365
Coordinates   5345410..5346009 (+) Length   199 a.a.
NCBI ID   WP_266432022.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01340     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5340410..5351009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG585_RS24380 (OG585_24400) - 5342211..5343775 (+) 1565 Protein_4806 substrate-binding domain-containing protein -
  OG585_RS24385 (OG585_24405) - 5343955..5344695 (-) 741 WP_266626959.1 SLATT domain-containing protein -
  OG585_RS24390 (OG585_24410) - 5345011..5345352 (+) 342 WP_266432024.1 YbaB/EbfC family nucleoid-associated protein -
  OG585_RS24395 (OG585_24415) recR 5345410..5346009 (+) 600 WP_266432022.1 recombination mediator RecR Machinery gene
  OG585_RS24400 (OG585_24420) - 5346002..5346661 (+) 660 WP_266432021.1 DUF5063 domain-containing protein -
  OG585_RS24405 (OG585_24425) - 5347098..5347805 (-) 708 WP_327138102.1 sulfite exporter TauE/SafE family protein -
  OG585_RS24410 (OG585_24430) - 5348208..5349485 (+) 1278 WP_101399547.1 aspartate kinase -
  OG585_RS24415 (OG585_24435) - 5349520..5350575 (+) 1056 WP_266626961.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21838.28 Da        Isoelectric Point: 4.9908

>NTDB_id=659538 OG585_RS24395 WP_266432022.1 5345410..5346009(+) (recR) [Streptomyces sp. NBC_01340]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEVKAKVRFCATCGNVAQEELCNICRDPRRDLTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGAVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=659538 OG585_RS24395 WP_266432022.1 5345410..5346009(+) (recR) [Streptomyces sp. NBC_01340]
GTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCGACGGACGTCCGCCGGCTCGCGCAGTGCCTCATGGAGGTCAAGGCGAAGGTCC
GGTTCTGTGCGACCTGCGGCAATGTGGCGCAGGAGGAACTGTGCAACATCTGCCGCGACCCGCGCCGGGATCTGACCGTC
ATCTGTGTGGTCGAGGAGCCCAAGGACGTCGTCGCGATCGAGCGGACGCGTGAGTTCCGGGGCAAGTACCACGTGCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTCCGGATAAGGGAACTCCTCGCCCGTCTCGCCGACGGCG
CGGTCACGGAGCTCATCCTCGCCACGGACCCGAACCTGGAGGGCGAGGCGACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAGGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACACT
CGGGCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.082

98.492

0.533
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.907

97.487

0.457