Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SMUNUM_RS01305 Genome accession   NZ_AP014571
Coordinates   249654..250706 (+) Length   350 a.a.
NCBI ID   WP_002267833.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 244654..255706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS01290 (SMNUM_0216) - 245933..247582 (+) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -
  SMUNUM_RS01295 (SMNUM_0217) - 247688..248602 (+) 915 WP_002262739.1 ABC transporter permease -
  SMUNUM_RS01300 (SMNUM_0218) - 248613..249644 (+) 1032 WP_002263989.1 ABC transporter permease -
  SMUNUM_RS01305 (SMNUM_0219) oppD 249654..250706 (+) 1053 WP_002267833.1 ABC transporter ATP-binding protein Regulator
  SMUNUM_RS01310 (SMNUM_0220) amiF 250699..251625 (+) 927 WP_002297178.1 ATP-binding cassette domain-containing protein Regulator
  SMUNUM_RS01315 (SMNUM_0221) - 252269..252871 (+) 603 WP_002262735.1 nitroreductase family protein -
  SMUNUM_RS01320 (SMNUM_0222) - 253088..254053 (-) 966 WP_002263993.1 LuxR C-terminal-related transcriptional regulator -
  SMUNUM_RS01325 (SMNUM_0223) ptcA 254292..255311 (+) 1020 WP_002282737.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39132.65 Da        Isoelectric Point: 5.7541

>NTDB_id=65952 SMUNUM_RS01305 WP_002267833.1 249654..250706(+) (oppD) [Streptococcus mutans LP13]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWGKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=65952 SMUNUM_RS01305 WP_002267833.1 249654..250706(+) (oppD) [Streptococcus mutans LP13]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAACCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTGACCACAC
GAACTTTAATGGGCCTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTCAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGCGGTATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGGAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

99.143

100

0.991
  amiE Streptococcus salivarius strain HSISS4

54.728

99.714

0.546
  amiE Streptococcus thermophilus LMG 18311

54.913

98.857

0.543
  amiE Streptococcus thermophilus LMD-9

54.913

98.857

0.543

Multiple sequence alignment