Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SMUNUM_RS01310 Genome accession   NZ_AP014571
Coordinates   250699..251625 (+) Length   308 a.a.
NCBI ID   WP_002297178.1    Uniprot ID   -
Organism   Streptococcus mutans LP13     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 245699..256625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS01290 (SMNUM_0216) - 245933..247582 (+) 1650 WP_002262740.1 peptide ABC transporter substrate-binding protein -
  SMUNUM_RS01295 (SMNUM_0217) - 247688..248602 (+) 915 WP_002262739.1 ABC transporter permease -
  SMUNUM_RS01300 (SMNUM_0218) - 248613..249644 (+) 1032 WP_002263989.1 ABC transporter permease -
  SMUNUM_RS01305 (SMNUM_0219) oppD 249654..250706 (+) 1053 WP_002267833.1 ABC transporter ATP-binding protein Regulator
  SMUNUM_RS01310 (SMNUM_0220) amiF 250699..251625 (+) 927 WP_002297178.1 ATP-binding cassette domain-containing protein Regulator
  SMUNUM_RS01315 (SMNUM_0221) - 252269..252871 (+) 603 WP_002262735.1 nitroreductase family protein -
  SMUNUM_RS01320 (SMNUM_0222) - 253088..254053 (-) 966 WP_002263993.1 LuxR C-terminal-related transcriptional regulator -
  SMUNUM_RS01325 (SMNUM_0223) ptcA 254292..255311 (+) 1020 WP_002282737.1 putrescine carbamoyltransferase -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34873.00 Da        Isoelectric Point: 7.3331

>NTDB_id=65953 SMUNUM_RS01310 WP_002297178.1 250699..251625(+) (amiF) [Streptococcus mutans LP13]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLATEEEAKTYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=65953 SMUNUM_RS01310 WP_002297178.1 250699..251625(+) (amiF) [Streptococcus mutans LP13]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCTATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTTGAAGGCGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGGGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTAGCAACAGAAGAAGAGGCAAAAACCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.393

99.026

0.558
  amiF Streptococcus thermophilus LMG 18311

56.066

99.026

0.555
  amiF Streptococcus salivarius strain HSISS4

56.066

99.026

0.555

Multiple sequence alignment