Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG206_RS17700 Genome accession   NZ_CP108364
Coordinates   4001867..4002466 (+) Length   199 a.a.
NCBI ID   WP_327117161.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01341     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3996867..4007466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG206_RS17675 (OG206_17705) - 3997235..3998608 (+) 1374 WP_327117153.1 aspartate aminotransferase family protein -
  OG206_RS17680 (OG206_17710) - 3998698..3999414 (+) 717 WP_327117155.1 GntR family transcriptional regulator -
  OG206_RS17685 (OG206_17715) - 3999633..4000283 (+) 651 WP_327117157.1 hypothetical protein -
  OG206_RS17690 (OG206_17720) - 4000315..4001103 (-) 789 WP_327117159.1 SLATT domain-containing protein -
  OG206_RS17695 (OG206_17725) - 4001464..4001805 (+) 342 WP_327122308.1 YbaB/EbfC family nucleoid-associated protein -
  OG206_RS17700 (OG206_17730) recR 4001867..4002466 (+) 600 WP_327117161.1 recombination mediator RecR Machinery gene
  OG206_RS17705 (OG206_17735) - 4002550..4003209 (+) 660 WP_327117163.1 DUF5063 domain-containing protein -
  OG206_RS17710 (OG206_17740) - 4003441..4004709 (+) 1269 WP_327117165.1 aspartate kinase -
  OG206_RS17715 (OG206_17745) - 4004706..4005770 (+) 1065 WP_327117167.1 aspartate-semialdehyde dehydrogenase -
  OG206_RS17720 (OG206_17750) - 4006130..4006705 (+) 576 WP_327122309.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21915.21 Da        Isoelectric Point: 5.1777

>NTDB_id=659467 OG206_RS17700 WP_327117161.1 4001867..4002466(+) (recR) [Streptomyces sp. NBC_01341]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCEVCGNVAQQEQCGICRDARRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=659467 OG206_RS17700 WP_327117161.1 4001867..4002466(+) (recR) [Streptomyces sp. NBC_01341]
TTGTACGAAGGCGTGGTTCAGGAACTCATCGACGAGCTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAACCCACCGACGTACGCCGTCTGGCCCACGCCCTCCTCGAGGTGAAGGACAAGGTCC
GCTTCTGCGAGGTCTGCGGCAACGTCGCCCAGCAGGAGCAGTGCGGCATCTGCCGCGACGCACGCCGCGACCGCTCGGTC
ATCTGCGTGGTGGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTGCTCGG
CGGTGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGATCTGCGCATCAGGGAACTCCTGGCCCGGCTCGCGGACGGCT
CGATCACCGAGCTGATCCTGGCGACGGACCCCAACCTCGAGGGCGAGGCCACGGCGACGTACCTCGCCCGGATGGTCAAG
CCGATGGGCCTGCGGGTGACACGGCTGGCGAGCGGACTGCCGGTGGGCGGCGACCTCGAGTACGCCGACGAGGTGACGCT
GGGCCGCGCCTTCGAGGGGAGGCGACTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447